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Protein
Homologs
Fitness for 5 genes in
Escherichia coli BW25113
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500 nt
pyrF and yciH overlap by 1 nucleotides
yciH and osmB are separated by 125 nucleotides
osmB and yciT are separated by 268 nucleotides
yciT and yciZ are separated by 89 nucleotides
b1281: pyrF - orotidine 5'-phosphate decarboxylase (NCBI), at 1,339,945 to 1,340,682
pyrF
b1282: yciH - orf, hypothetical protein (VIMSS), at 1,340,682 to 1,341,008
yciH
b1283: osmB - lipoprotein (NCBI), at 1,341,134 to 1,341,352
osmB
b1284: yciT - predicted DNA-binding transcriptional regulator (NCBI), at 1,341,621 to 1,342,370
yciT
b4596: yciZ - hypothetical protein (RefSeq), at 1,342,460 to 1,342,633
yciZ
Group
Condition
b1281
b1282
b1283
b1284
b4596
pyrF
yciH
osmB
yciT
yciZ
carbon source
carbon source D-Mannose 0.5mM
-7.2
-0.6
-0.2
-0.7
-4.0
carbon source
carbon source D-Glucose 0.25mM
-7.4
-1.1
-0.6
-1.1
-0.4
carbon source
Glucose (C)
-8.1
-0.3
+0.0
-0.3
-0.3
carbon source
Ying_OrganicAcid7 rep A; time point 3
-8.5
-0.2
-0.2
+0.1
+0.0
carbon source
carbon source D-Mannose 1mM
-4.1
-0.3
-0.1
-0.4
-4.0
carbon source
Ying_sugar7 rep B; time point 2
-8.7
-0.1
+0.1
+0.1
-0.2
carbon source
carbon source D-Mannose 1mM
-7.6
-0.0
-0.4
-0.4
-0.3
carbon source
carbon source D-Glucose 0.5mM
-6.7
-1.0
-0.2
-0.4
-0.3
carbon source
Ying_AminoAcid20 rep B; time point 3
-8.4
-0.6
-0.2
+0.1
+0.5
carbon source
Ying_sugar7 rep C; time point 3
-8.5
-0.2
+0.1
+0.5
-0.4
carbon source
Glucose (C)
-7.7
-0.3
+0.0
-0.2
-0.3
carbon source
Ying_AminoAcid20 rep A; time point 3
-8.7
+0.1
-0.0
+0.3
-0.0
carbon source
Ying_sugar7 rep B; time point 3
-8.6
-0.1
-0.0
+0.4
+0.0
carbon source
Ying_sugar7 rep A; time point 3
-8.5
-0.0
-0.0
+0.3
+0.0
carbon source
carbon source D-Glucose 1mM
-7.9
+0.2
-0.3
-0.2
-0.1
carbon source
Ying_sugar7 rep A; time point 2
-7.5
-0.1
-0.1
-0.1
-0.2
carbon source
carbon source D-Glucose 20mM
-7.6
+0.1
+0.1
-0.5
-0.1
carbon source
Ying_OrganicAcid7 rep C; time point 3
-7.2
+0.0
-0.3
-0.0
-0.5
stress
RCH2_defined_1percent_glucose with Chloride 100 mM and Betaine 100 uM
-6.9
-0.2
-0.3
-0.0
-0.5
carbon source
carbon source D-Mannose 0.5mM
-7.7
-0.3
+0.2
+0.1
+0.2
carbon source
carbon source D-Mannose 20mM
-7.8
+0.2
+0.1
-0.0
+0.1
carbon source
Ying_AminoAcid20 rep C; time point 3
-7.3
-0.4
+0.1
+0.4
-0.0
carbon source
Ying_AminoAcid20 rep C; time point 2
-7.1
-0.2
-0.2
+0.2
+0.1
carbon source
carbon source D-Glucose 5mM
-7.0
-0.5
+0.3
-0.9
+1.1
carbon source
carbon source D-Glucose 0.25mM
-7.2
+0.0
+0.4
-0.1
+0.5
carbon source
carbon source D-Mannose 5mM
-6.9
-0.1
+1.2
-0.4
+1.0
carbon source
LMW_DNA_from_Pseudomonas_EB271-B4-1 12 ppm (C)
-5.7
-0.5
-0.1
+1.6
+0.2
carbon source
LMW_DNA_from_Lysinibacillus_FW301-JW8 7.7 ppm (C)
-6.9
-0.2
+0.3
+1.6
+0.9
carbon source
LMW_DNA_from_Pseudomonas_EB271-B4-1 12 ppm (C)
-5.8
-0.0
+0.1
+2.1
+1.1
carbon source
LMW_DNA_from_Lysinibacillus_FW301-JW8 7.7 ppm (C)
-4.1
-0.4
-0.2
+2.3
+1.3
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