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Protein
Homologs
Fitness for 5 genes in
Escherichia coli BW25113
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
narL and narX overlap by 8 nucleotides
narX and narK are separated by 338 nucleotides
narK and narG are separated by 515 nucleotides
narG and narH overlap by 4 nucleotides
b1221: narL - DNA-binding response regulator in two-component regulatory system with NarX (or NarQ) (NCBI), at 1,274,402 to 1,275,052
narL
b1222: narX - sensory histidine kinase in two-component regulatory system with NarL (NCBI), at 1,275,045 to 1,276,841
narX
b1223: narK - nitrate/nitrite transporter (NCBI), at 1,277,180 to 1,278,571
narK
b1224: narG - nitrate reductase 1, alpha subunit (NCBI), at 1,279,087 to 1,282,830
narG
b1225: narH - nitrate reductase 1, beta (Fe-S) subunit (NCBI), at 1,282,827 to 1,284,365
narH
Group
Condition
b1221
b1222
b1223
b1224
b1225
narL
narX
narK
narG
narH
phage
T7_phage 0.00015625 MOI TC3
-0.5
-1.1
-0.2
+0.0
-0.9
stress
LB Anaerobic with Phenazine ethosulfate 0.000125 mM
+0.5
-0.0
-0.9
-0.9
-0.6
phage
T7_phage 0.0015625 MOI TC2
+0.4
+0.3
-1.0
-0.4
-0.6
stress
LB Anaerobic with Phenazine ethosulfate 0.000125 mM
+0.7
+0.0
-0.7
-0.8
-0.4
stress
Aluminum chloride 5 mM
+0.1
-1.4
+0.5
+0.3
-0.3
stress
LB Aerobic with Chlorhexidine diacetate salt 0.000000625 mM
+0.9
+0.6
-0.6
-0.3
-0.3
carbon source
L-Malic (C)
+1.0
-0.4
+0.6
-0.2
-0.8
attachment_assay_attached_sample
Time0_Wash=None; Attachment_time=2hrs; Attachment_surface=PDMS; Sample_type=attached; Outgrowth=LB
+0.3
-0.4
-0.7
+0.6
+0.5
carbon source
Glycolic Acid (C)
+0.8
-0.5
+0.6
+0.2
-0.6
stress
octanol 0.08 vol%
+0.7
-1.2
+0.6
+0.1
+0.6
motility
outer cut, LB soft agar motility assay
+0.0
+1.0
+0.5
+0.5
-0.8
carbon source
a-Ketoglutaric (C)
+0.2
+1.4
+0.3
-0.0
-0.6
carbon source
Ying_Others16 rep B; time point 1
+0.4
+1.3
+0.2
+0.1
-0.5
carbon source
a-Ketoglutaric (C)
+0.5
+1.4
+0.4
-0.2
-0.4
phage
RB68
-3.3
+3.9
+0.5
+0.2
+0.4
plasmid transformation
mariner vector transformation; liquid outgrowth assay
+1.0
+1.1
-0.3
+0.0
-0.0
plasmid transformation
mariner vector transformation; liquid outgrowth assay
+1.3
+1.0
-0.5
-0.1
+0.3
stress
Trimethoprim 0.005 mM
+0.2
+1.3
+1.3
-0.3
-0.4
carbon source
Ying_Others16 rep B; time point 2
-0.2
+2.8
-0.5
-0.0
+0.0
carbon source
Adenosine 0.3742 mM (C)
+0.2
+2.0
+0.3
+0.1
-0.3
stress
LB Anaerobic with Cephalothin 0.0000078125 mM
+1.6
+0.2
+0.4
-0.2
+0.2
carbon source
Guanosine 0.35306 mM (C)
-0.2
+2.1
+0.1
+0.2
+0.2
stress
LB Anaerobic with Benzethonium chloride 0.00003125 mM
+0.3
+0.7
-0.5
+1.0
+1.0
carbon source
Ying_Others16 rep A; time point 2
+0.0
+3.1
-0.4
-0.1
+0.1
stress
Benzalkonium Chloride 0.004 mg/ml
+0.4
+1.2
+1.0
+0.3
+0.1
stress
LB Anaerobic with Nitrofurantoin 0.00003125 mM
+1.5
-0.1
+0.4
+0.7
+0.8
phage
RB68
-2.1
+4.1
+0.1
+0.7
+0.9
stress
Chlorite 1.25 mM
+0.4
-0.8
+5.1
-0.1
-0.0
phage
Ste41
-1.3
+4.9
+0.0
+0.4
+1.0
phage
Ste41
-0.3
+4.8
+0.3
+1.1
+1.0
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