Fitness for 5 genes in Escherichia coli BW25113

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500 ntdhaM and dhaL are separated by 10 nucleotidesdhaL and b1200 are separated by 10 nucleotidesb1200 and b1201 are separated by 227 nucleotidesb1201 and ycgV are separated by 99 nucleotides b1198: dhaM - fused predicted dihydroxyacetone-specific PTS enzymes: HPr component/EI component (RefSeq), at 1,246,919 to 1,248,337 dhaM b1199: dhaL - dihydroxyacetone kinase, C-terminal domain (NCBI), at 1,248,348 to 1,248,980 dhaL b1200: b1200 - putative dihydroxyacetone kinase (EC 2.7.1.2) (VIMSS), at 1,248,991 to 1,250,061 b1200 b1201: b1201 - putative sensor-type regulator (VIMSS), at 1,250,289 to 1,252,208 b1201 b1202: ycgV - predicted adhesin (NCBI), at 1,252,308 to 1,255,175 ycgV
Group Condition b1198 b1199 b1200 b1201 b1202
dhaM dhaL b1200 b1201 ycgV
phage TP4 -0.6 -0.8 -1.1 -0.8 -0.0
stress M9 Anaerobic Capecitabine 5000 uM -0.9 -0.6 -0.9 -0.8 -0.1
phage RB68 -0.4 -1.3 -0.9 -0.5 +0.1
m9 aerobic no stress control M9 aerobic no stress control -0.8 -0.5 -0.7 -0.8 -0.0
phage T7_phage 0.00015625 MOI TC3 +0.1 -1.8 -0.2 -0.5 -0.4
m9 anaerobic no stress control M9 anaerobic no stress control -0.7 -0.2 -0.9 -0.8 -0.1
stress LB Anaerobic with Ciprofloxacin Hydrochloride 0.0000000390625 mM -0.2 -0.5 -0.9 -0.8 -0.1
phage Ste41 -0.5 -0.2 -1.0 -0.7 -0.0
m9 anaerobic no stress control M9 anaerobic no stress control -0.7 -0.2 -0.8 -0.8 +0.1
stress LB Aerobic with Nitrofurantoin 0.00003125 mM -1.3 -0.5 -0.3 -0.1 -0.2
carbon source carbon source D-Glucose 0.25mM -1.0 -0.1 -0.3 -0.9 +0.0
stress M9 Aerobic 5-Fluorodihydropyrimidine-2,4-dione 5000 uM -0.6 -0.4 -0.6 -0.7 +0.0
stress M9 Anaerobic Capecitabine 5000 uM -0.7 -0.3 -0.4 -0.8 -0.1
stress LB Anaerobic with Cephalothin 0.0000078125 mM -0.7 +0.6 -0.3 -1.0 -0.0
stress LB Anaerobic with Nitrofurantoin 0.00003125 mM -0.6 +0.6 -0.5 -1.1 +0.2
phage N4_phage 0.009375 MOI TC2 -1.0 +0.2 -0.4 -0.5 +0.3
stress LB Aerobic with Novobiocin 0.0000625 mM -1.3 +0.5 +0.3 -0.4 -0.1
stress Cephalothin 0.01 mg/ml -1.3 +1.3 -0.5 -0.8 +0.4
phage Ste41 -0.8 +0.4 -0.8 +0.1 +0.3
phage Δdbn_10 +0.4 -1.6 +0.6 -0.1 +0.1
phage T7_phage 0.0015625 MOI TC2 +0.3 +0.6 +0.5 -0.6 -0.4
carbon source Glycolic Acid (C) +0.6 -1.2 +0.4 +0.6 +0.1
stress LB Aerobic with 2-Mercaptopyridine N-oxide 0.0000078125 mM -0.8 +1.3 +0.3 +0.0 +0.0
carbon source acetate (C) +0.9 +0.3 +0.6 +0.4 +0.2
motility outer cut, LB soft agar motility assay +0.4 +0.6 +0.2 +0.7 +0.5
carbon source D-Trehalose (C) +0.8 +0.3 +0.8 +0.9 +0.2
carbon source succinate (C) +1.5 +0.2 +1.2 +1.1 +0.2
carbon source L-Malic (C) +1.6 +0.2 +1.3 +1.5 +0.0
carbon source L-Malic (C) +1.6 +0.8 +1.3 +1.3 +0.1
carbon source succinate (C) +1.7 +0.9 +1.3 +1.4 -0.0
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