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Protein
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Fitness for 5 genes in
Escherichia coli BW25113
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
dhaM and dhaL are separated by 10 nucleotides
dhaL and b1200 are separated by 10 nucleotides
b1200 and b1201 are separated by 227 nucleotides
b1201 and ycgV are separated by 99 nucleotides
b1198: dhaM - fused predicted dihydroxyacetone-specific PTS enzymes: HPr component/EI component (RefSeq), at 1,246,919 to 1,248,337
dhaM
b1199: dhaL - dihydroxyacetone kinase, C-terminal domain (NCBI), at 1,248,348 to 1,248,980
dhaL
b1200: b1200 - putative dihydroxyacetone kinase (EC 2.7.1.2) (VIMSS), at 1,248,991 to 1,250,061
b1200
b1201: b1201 - putative sensor-type regulator (VIMSS), at 1,250,289 to 1,252,208
b1201
b1202: ycgV - predicted adhesin (NCBI), at 1,252,308 to 1,255,175
ycgV
Group
Condition
b1198
b1199
b1200
b1201
b1202
dhaM
dhaL
b1200
b1201
ycgV
phage
TP4
-0.6
-0.8
-1.1
-0.8
-0.0
stress
M9 Anaerobic Capecitabine 5000 uM
-0.9
-0.6
-0.9
-0.8
-0.1
phage
RB68
-0.4
-1.3
-0.9
-0.5
+0.1
m9 aerobic no stress control
M9 aerobic no stress control
-0.8
-0.5
-0.7
-0.8
-0.0
phage
T7_phage 0.00015625 MOI TC3
+0.1
-1.8
-0.2
-0.5
-0.4
m9 anaerobic no stress control
M9 anaerobic no stress control
-0.7
-0.2
-0.9
-0.8
-0.1
stress
LB Anaerobic with Ciprofloxacin Hydrochloride 0.0000000390625 mM
-0.2
-0.5
-0.9
-0.8
-0.1
phage
Ste41
-0.5
-0.2
-1.0
-0.7
-0.0
m9 anaerobic no stress control
M9 anaerobic no stress control
-0.7
-0.2
-0.8
-0.8
+0.1
stress
LB Aerobic with Nitrofurantoin 0.00003125 mM
-1.3
-0.5
-0.3
-0.1
-0.2
carbon source
carbon source D-Glucose 0.25mM
-1.0
-0.1
-0.3
-0.9
+0.0
stress
M9 Aerobic 5-Fluorodihydropyrimidine-2,4-dione 5000 uM
-0.6
-0.4
-0.6
-0.7
+0.0
stress
M9 Anaerobic Capecitabine 5000 uM
-0.7
-0.3
-0.4
-0.8
-0.1
stress
LB Anaerobic with Cephalothin 0.0000078125 mM
-0.7
+0.6
-0.3
-1.0
-0.0
stress
LB Anaerobic with Nitrofurantoin 0.00003125 mM
-0.6
+0.6
-0.5
-1.1
+0.2
phage
N4_phage 0.009375 MOI TC2
-1.0
+0.2
-0.4
-0.5
+0.3
stress
LB Aerobic with Novobiocin 0.0000625 mM
-1.3
+0.5
+0.3
-0.4
-0.1
stress
Cephalothin 0.01 mg/ml
-1.3
+1.3
-0.5
-0.8
+0.4
phage
Ste41
-0.8
+0.4
-0.8
+0.1
+0.3
phage
Δdbn_10
+0.4
-1.6
+0.6
-0.1
+0.1
phage
T7_phage 0.0015625 MOI TC2
+0.3
+0.6
+0.5
-0.6
-0.4
carbon source
Glycolic Acid (C)
+0.6
-1.2
+0.4
+0.6
+0.1
stress
LB Aerobic with 2-Mercaptopyridine N-oxide 0.0000078125 mM
-0.8
+1.3
+0.3
+0.0
+0.0
carbon source
acetate (C)
+0.9
+0.3
+0.6
+0.4
+0.2
motility
outer cut, LB soft agar motility assay
+0.4
+0.6
+0.2
+0.7
+0.5
carbon source
D-Trehalose (C)
+0.8
+0.3
+0.8
+0.9
+0.2
carbon source
succinate (C)
+1.5
+0.2
+1.2
+1.1
+0.2
carbon source
L-Malic (C)
+1.6
+0.2
+1.3
+1.5
+0.0
carbon source
L-Malic (C)
+1.6
+0.8
+1.3
+1.3
+0.1
carbon source
succinate (C)
+1.7
+0.9
+1.3
+1.4
-0.0
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