Fitness for 5 genes in Escherichia coli BW25113

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500 ntdadA and dadX are separated by 9 nucleotidesdadX and b1191 are separated by 385 nucleotidesb1191 and ldcA are separated by 94 nucleotidesldcA and mltE are separated by 99 nucleotides b1189: dadA - D-amino acid dehydrogenase (quinone) DadA (EC 1.4.5.1) (from data), at 1,236,794 to 1,238,092 dadA b1190: dadX - alanine racemase (NCBI), at 1,238,102 to 1,239,172 dadX b1191: b1191 - orf, hypothetical protein (VIMSS), at 1,239,558 to 1,241,294 b1191 b1192: ldcA - L,D-carboxypeptidase A (NCBI), at 1,241,389 to 1,242,303 ldcA b1193: mltE - murein transglycosylase E (VIMSS), at 1,242,403 to 1,243,014 mltE
Group Condition b1189 b1190 b1191 b1192 b1193
dadA dadX b1191 ldcA mltE
carbon source LMW_DNA_from_Pseudomonas_EB271-B4-1 12 ppm (C) +0.3 +0.4 +0.4 -11.2 N.D.
nitrogen source D-Alanine (N) -3.3 -1.4 +0.3 -5.7 N.D.
carbon source Ying_AminoAcid20 rep A; time point 3 -0.4 -1.7 +0.9 -8.3 N.D.
phage Phage_N4_cage_3_mouse_3_Cecum_40 hr +0.2 -0.7 -0.0 -8.9 N.D.
carbon source carbon source D-Glucose 0.25mM +0.5 +0.8 +0.1 -10.5 N.D.
phage Phage_N4_cage_4_mouse_1_Cecum_40 hr -0.1 +0.1 +0.0 -9.2 N.D.
carbon source carbon source D-Mannose 0.5mM +0.6 +0.5 +0.3 -10.4 N.D.
carbon source Ying_AminoAcid20 rep A; time point 2 -0.2 -1.1 +0.6 -8.2 N.D.
carbon source Ying_AminoAcid20 rep B; time point 2 -0.2 -1.3 +0.7 -8.2 N.D.
carbon source carbon source D-Mannose 0.5mM +0.4 +1.1 +0.6 -11.0 N.D.
carbon source carbon source D-Mannose 1mM +0.1 +0.5 -0.2 -9.2 N.D.
carbon source Ying_AminoAcid20 rep C; time point 3 -0.2 -1.2 +1.0 -8.2 N.D.
carbon source HMW_DNA_from_Pseudomonas_EB271-B4-1 46.9 ppm (C) -0.2 +0.3 +0.2 -8.6 N.D.
carbon source LMW_DNA_from_Pseudomonas_EB271-B4-1 12 ppm (C) +0.0 +0.6 +0.3 -8.9 N.D.
carbon source LMW_DNA_from_Lysinibacillus_FW301-JW8 7.7 ppm (C) +0.2 +0.3 +0.2 -8.6 N.D.
carbon source Ying_AminoAcid20 rep B; time point 3 +0.2 -1.3 +0.7 -7.5 N.D.
carbon source LMW_DNA_from_Lysinibacillus_FW301-JW8 7.7 ppm (C) +0.1 +0.8 +0.3 -8.9 N.D.
predation 6 hr rep1_HD100_10fold_dilution_grewON +0.9 -0.6 +0.5 -7.7 N.D.
carbon source Ying_sugar7 rep B; time point 3 +0.1 +1.1 +0.3 -8.2 N.D.
carbon source Ying_sugar7 rep C; time point 3 +0.1 +1.3 +0.3 -8.1 N.D.
carbon source Ying_sugar7 rep A; time point 3 +0.1 +1.2 +0.4 -7.5 N.D.
carbon source Ying_Nucleobase14 rep A; time point 2 +0.3 +2.3 +0.3 -8.4 N.D.
carbon source Ying_Nucleobase14 rep C; time point 2 +0.4 +2.2 +0.2 -8.1 N.D.
carbon source Ying_Nucleobase14 rep C; time point 3 +0.5 +3.0 +0.2 -8.1 N.D.
carbon source Ying_Nucleobase14 rep B; time point 2 +0.5 +2.4 +0.1 -7.2 N.D.
carbon source Ying_Nucleobase14 rep A; time point 3 +0.7 +3.1 +0.2 -8.1 N.D.
carbon source Ying_OrganicAcid7 rep A; time point 3 +0.6 +2.2 +0.9 -7.6 N.D.
carbon source Ying_Nucleobase14 rep B; time point 3 +0.7 +3.2 +0.3 -7.9 N.D.
carbon source Ying_OrganicAcid7 rep B; time point 3 +0.7 +2.2 +1.2 -7.6 N.D.
carbon source Ying_OrganicAcid7 rep C; time point 3 +0.8 +2.2 +1.0 -7.0 N.D.
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