Fitness for 5 genes in Escherichia coli BW25113

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500 ntycgB and dadA are separated by 329 nucleotidesdadA and dadX are separated by 9 nucleotidesdadX and b1191 are separated by 385 nucleotidesb1191 and ldcA are separated by 94 nucleotides b1188: ycgB - ycgB component of nitrogen-related signalling system (of yeaGH-ycgB) (from data), at 1,234,932 to 1,236,464 ycgB b1189: dadA - D-amino acid dehydrogenase (quinone) DadA (EC 1.4.5.1) (from data), at 1,236,794 to 1,238,092 dadA b1190: dadX - alanine racemase (NCBI), at 1,238,102 to 1,239,172 dadX b1191: b1191 - orf, hypothetical protein (VIMSS), at 1,239,558 to 1,241,294 b1191 b1192: ldcA - L,D-carboxypeptidase A (NCBI), at 1,241,389 to 1,242,303 ldcA
Group Condition b1188 b1189 b1190 b1191 b1192
ycgB dadA dadX b1191 ldcA
carbon source carbon source D-Glucose 0.25mM -1.7 +0.5 +0.8 +0.1 -10.5
carbon source LMW_DNA_from_Pseudomonas_EB271-B4-1 12 ppm (C) -0.5 +0.3 +0.4 +0.4 -11.2
carbon source carbon source D-Mannose 0.5mM -1.4 +0.6 +0.5 +0.3 -10.4
carbon source carbon source D-Mannose 0.5mM -1.5 +0.4 +1.1 +0.6 -11.0
nitrogen source D-Alanine (N) +0.0 -3.3 -1.4 +0.3 -5.7
phage Phage_N4_cage_3_mouse_3_Cecum_40 hr -0.3 +0.2 -0.7 -0.0 -8.9
carbon source carbon source D-Mannose 1mM -0.7 +0.1 +0.5 -0.2 -9.2
carbon source LMW_DNA_from_Pseudomonas_EB271-B4-1 12 ppm (C) -0.8 +0.0 +0.6 +0.3 -8.9
carbon source LMW_DNA_from_Lysinibacillus_FW301-JW8 7.7 ppm (C) -0.7 +0.2 +0.3 +0.2 -8.6
carbon source Ying_AminoAcid20 rep A; time point 2 +0.5 -0.2 -1.1 +0.6 -8.2
carbon source LMW_DNA_from_Lysinibacillus_FW301-JW8 7.7 ppm (C) -0.7 +0.1 +0.8 +0.3 -8.9
carbon source Ying_AminoAcid20 rep B; time point 2 +0.6 -0.2 -1.3 +0.7 -8.2
carbon source Ying_Nucleobase14 rep C; time point 2 -2.9 +0.4 +2.2 +0.2 -8.1
carbon source Ying_AminoAcid20 rep A; time point 3 +1.2 -0.4 -1.7 +0.9 -8.3
carbon source Ying_Nucleobase14 rep A; time point 2 -2.5 +0.3 +2.3 +0.3 -8.4
carbon source Ying_sugar7 rep C; time point 2 -1.3 +0.2 +0.8 +0.3 -7.8
carbon source Ying_Nucleobase14 rep A; time point 3 -3.5 +0.7 +3.1 +0.2 -8.1
carbon source carbon source D-Glucose 1mM -2.4 +0.4 +0.7 +0.4 -6.6
carbon source carbon source D-Glucose 0.25mM -1.6 +0.9 +0.4 +0.2 -7.4
carbon source Ying_sugar7 rep B; time point 3 -0.8 +0.1 +1.1 +0.3 -8.2
carbon source Ying_AminoAcid20 rep C; time point 3 +1.3 -0.2 -1.2 +1.0 -8.2
carbon source Ying_sugar7 rep C; time point 3 -0.8 +0.1 +1.3 +0.3 -8.1
carbon source Ying_Nucleobase14 rep C; time point 3 -2.9 +0.5 +3.0 +0.2 -8.1
carbon source Ying_Nucleobase14 rep B; time point 2 -2.9 +0.5 +2.4 +0.1 -7.2
carbon source Ying_Nucleobase14 rep B; time point 3 -2.9 +0.7 +3.2 +0.3 -7.9
carbon source Ying_AminoAcid20 rep B; time point 3 +1.4 +0.2 -1.3 +0.7 -7.5
carbon source Ying_OrganicAcid7 rep A; time point 3 -0.5 +0.6 +2.2 +0.9 -7.6
carbon source Ying_OrganicAcid7 rep B; time point 3 -0.4 +0.7 +2.2 +1.2 -7.6
carbon source Ying_OrganicAcid7 rep C; time point 3 -0.6 +0.8 +2.2 +1.0 -7.0
carbon source Acetate (C) +1.9 +0.2 +0.8 +1.8 -5.8
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