Fitness for 5 genes in Escherichia coli BW25113

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500 nticdC and elbA are separated by 102 nucleotideselbA and ycgX are separated by 699 nucleotidesycgX and ycgE are separated by 220 nucleotidesycgE and ycgF are separated by 204 nucleotides b4519: icdC - no description, at 1,210,636 to 1,210,800 icdC b1160: elbA - hypothetical protein (NCBI), at 1,210,903 to 1,211,226 elbA b1161: ycgX - hypothetical protein (NCBI), at 1,211,926 to 1,212,330 ycgX b1162: ycgE - predicted DNA-binding transcriptional regulator (NCBI), at 1,212,551 to 1,213,282 ycgE b1163: ycgF - predicted FAD-binding phosphodiesterase (NCBI), at 1,213,487 to 1,214,698 ycgF
Group Condition b4519 b1160 b1161 b1162 b1163
icdC elbA ycgX ycgE ycgF
predation 3 hr rep1_HD100_no_dilution -0.3 -2.4 -1.6 -0.1 -0.9
predation 6 hr rep2_HD100_10fold_dilution_grewON +0.2 -1.8 -1.9 -0.5 -0.8
nopredatorcontrol 18 hr NoPredatorControl -0.6 -2.5 -1.0 -0.2 -0.4
predation 3 hr rep1_Tiberius_10fold_dilution -0.2 -1.9 -1.9 -0.1 -0.4
motility inner cut, LB soft agar motility assay +0.2 -1.6 -3.4 +0.3 +0.2
nopredatorcontrol 18 hr NoPredatorControl -0.1 -2.4 -0.9 -0.4 -0.4
phage Phage_N4_cage_4_mouse_2_Cecum_40 hr -0.0 -3.0 -1.7 +0.6 -0.0
carbon source carbon source D-Mannose 1mM -0.0 -2.0 -2.1 +0.3 -0.2
stress 3-methyl-2-butenol (commercial) 0.5 vol% +0.5 -2.2 -1.9 +0.1 -0.2
carbon source carbon source D-Glucose 0.25mM +0.5 -1.7 -1.8 -0.1 -0.5
predation 3 hr rep1_HD100_100fold_dilution +0.2 -2.0 -1.6 +0.2 -0.4
carbon source carbon source D-Glucose 20mM +0.3 -1.9 -2.0 +0.4 -0.3
phage Phage_N4_cage_3_mouse_4_Cecum_40 hr +0.1 -2.8 -0.8 +0.4 +0.1
carbon source carbon source D-Mannose 0.5mM -0.1 -1.6 -1.8 +0.8 +0.1
control PBS_cage_2_mouse_3_Cecum_40 hr +0.2 -2.5 -1.4 +0.4 +0.6
control PBS_cage_2_mouse_2_Cecum_40 hr +0.7 -2.5 -1.5 +0.1 +0.4
phage Phage_N4_cage_3_mouse_1_Cecum_40 hr -0.2 -3.0 +1.2 -0.1 +0.1
carbon source carbon source D-Mannose 1mM +0.8 -1.7 +0.5 +0.9 -0.3
control PBS_cage_2_mice _Feces_40 hr +0.2 +1.3 -1.6 +0.5 +0.7
phage N4_phage 0.00009375 MOI TC4 -1.4 +1.5 +0.7 +0.6 -0.1
control PBS_cage_2_mouse_1_Cecum_40 hr +0.8 +2.3 -1.3 -0.0 -0.5
plasmid transformation mariner vector transformation; liquid outgrowth assay -1.3 -0.3 +1.6 +1.5 -0.1
plasmid transformation mariner vector transformation; liquid outgrowth assay -1.5 -0.3 +1.5 +1.6 +0.1
mzaabcde mzaABCDE -0.3 +2.3 +1.0 +0.1 -0.6
phage Δdbn_10 -0.6 +2.4 +1.2 -0.5 +0.0
phage T7_phage 0.0015625 MOI TC2 +0.6 -0.3 +1.5 +1.1 +1.1
phage Papa dilution 10-1 cacl2 maltose +0.1 +1.8 +1.5 +0.2 +0.9
stress Trimethoprim 0.005 mM +0.0 +1.8 +1.1 +0.8 +1.0
stress Cephalothin 0.01 mg/ml +0.2 -0.1 +4.3 +0.8 +0.4
phage T7_phage 0.00015625 MOI TC3 +1.4 +1.5 +2.6 +1.2 +1.5
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