Fitness for 5 genes in Escherichia coli BW25113

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500 ntpotA and pepT are separated by 249 nucleotidespepT and ycfD are separated by 48 nucleotidesycfD and phoQ are separated by 75 nucleotidesphoQ and phoP overlap by 1 nucleotides b1126: potA - putrescine/spermidine ABC transporter ATPase protein (NCBI), at 1,183,681 to 1,184,817 potA b1127: pepT - peptidase T (NCBI), at 1,185,067 to 1,186,293 pepT b1128: ycfD - orf, hypothetical protein (VIMSS), at 1,186,342 to 1,187,463 ycfD b1129: phoQ - sensory histidine kinase in two-compoent regulatory system with PhoP (NCBI), at 1,187,539 to 1,188,999 phoQ b1130: phoP - DNA-binding response regulator in two-component regulatory system with PhoQ (NCBI), at 1,188,999 to 1,189,670 phoP
Group Condition b1126 b1127 b1128 b1129 b1130
potA pepT ycfD phoQ phoP
stress octanol 0.08 vol% -3.3 -0.3 -0.7 -6.2 -6.8
carbon source Dodecanol and Rhamnolipid (C) +0.0 -0.2 -0.1 -7.1 -7.1
sulfur source M63 no sulfur + 5 mM L-cys +0.2 -0.3 -0.0 -5.9 -7.6
carbon source Dodecanol and Rhamnolipid (C) -0.4 -0.2 -0.3 -5.9 -5.9
sulfur source M63 no sulfur + 5 mM sulfate +0.1 -0.4 -0.1 -6.3 -5.7
carbon source Dodecanol (C) -0.2 -0.2 -0.4 -6.1 -5.5
carbon source Dodecanol (C) -0.1 +0.1 +0.0 -6.3 -6.1
sulfur source M63 no sulfur + 5 mM L-cys +0.3 -0.2 -0.1 -5.5 -6.2
carbon source D-Ribose (C) -0.4 +0.4 -0.0 -6.2 -5.4
carbon source NAG (C) -0.3 +0.3 +0.1 -6.2 -5.4
nitrogen source D-Alanine (N) +0.0 +0.2 +0.2 -5.7 -5.9
stress undecene 5 vol% -0.7 +0.1 -0.4 -5.2 -5.1
nitrogen source D-Serine (N) -0.3 +0.0 +0.1 -6.0 -4.8
sulfur source M63 no sulfur + 5 mM sulfate +0.2 -0.5 -0.1 -5.3 -5.3
carbon source D-Sorbitol (C) -0.3 -0.1 -0.0 -4.9 -5.6
nitrogen source L-Glutamine (N) -0.4 +0.1 +0.2 -5.5 -5.1
carbon source acetate (C) -0.9 +0.4 -0.8 -4.5 -4.9
carbon source D-Sorbitol (C) -0.2 -0.1 +0.1 -5.5 -4.9
carbon source D-Glucosamine Hydrochloride (C) -0.2 +0.3 +0.1 -5.7 -5.1
carbon source D-Glucosamine Hydrochloride (C) -0.4 +0.5 +0.1 -5.3 -5.4
nitrogen source L-Glutamine (N) -0.3 +0.1 +0.0 -5.8 -4.5
nitrogen source Putrescine (N) -0.4 +0.2 -0.3 -5.5 -4.4
carbon source D-Trehalose (C) -0.5 +0.1 +0.2 -5.0 -5.2
carbon source D-Trehalose (C) -0.4 -0.0 +0.3 -5.1 -5.0
nitrogen source Glycine (N) -0.2 +0.0 +0.5 -5.2 -5.2
carbon source D-Ribose (C) -0.2 +0.3 +0.1 -5.1 -5.3
nitrogen source D-Alanine (N) +0.0 +0.3 +0.2 -5.3 -5.1
carbon source D-Mannose (C) -0.2 +0.2 +0.3 -5.2 -5.0
carbon source L-Malic (C) -0.7 +0.4 +0.1 -4.7 -4.9
carbon source a-Ketoglutaric (C) +0.0 +0.2 +0.4 -5.0 -5.0
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