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Fitness for 5 genes in
Escherichia coli BW25113
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500 nt
potA and pepT are separated by 249 nucleotides
pepT and ycfD are separated by 48 nucleotides
ycfD and phoQ are separated by 75 nucleotides
phoQ and phoP overlap by 1 nucleotides
b1126: potA - putrescine/spermidine ABC transporter ATPase protein (NCBI), at 1,183,681 to 1,184,817
potA
b1127: pepT - peptidase T (NCBI), at 1,185,067 to 1,186,293
pepT
b1128: ycfD - orf, hypothetical protein (VIMSS), at 1,186,342 to 1,187,463
ycfD
b1129: phoQ - sensory histidine kinase in two-compoent regulatory system with PhoP (NCBI), at 1,187,539 to 1,188,999
phoQ
b1130: phoP - DNA-binding response regulator in two-component regulatory system with PhoQ (NCBI), at 1,188,999 to 1,189,670
phoP
Group
Condition
b1126
b1127
b1128
b1129
b1130
potA
pepT
ycfD
phoQ
phoP
stress
octanol 0.08 vol%
-3.3
-0.3
-0.7
-6.2
-6.8
carbon source
Dodecanol and Rhamnolipid (C)
+0.0
-0.2
-0.1
-7.1
-7.1
sulfur source
M63 no sulfur + 5 mM L-cys
+0.2
-0.3
-0.0
-5.9
-7.6
carbon source
Dodecanol and Rhamnolipid (C)
-0.4
-0.2
-0.3
-5.9
-5.9
sulfur source
M63 no sulfur + 5 mM sulfate
+0.1
-0.4
-0.1
-6.3
-5.7
carbon source
Dodecanol (C)
-0.2
-0.2
-0.4
-6.1
-5.5
carbon source
Dodecanol (C)
-0.1
+0.1
+0.0
-6.3
-6.1
sulfur source
M63 no sulfur + 5 mM L-cys
+0.3
-0.2
-0.1
-5.5
-6.2
carbon source
D-Ribose (C)
-0.4
+0.4
-0.0
-6.2
-5.4
carbon source
NAG (C)
-0.3
+0.3
+0.1
-6.2
-5.4
nitrogen source
D-Alanine (N)
+0.0
+0.2
+0.2
-5.7
-5.9
stress
undecene 5 vol%
-0.7
+0.1
-0.4
-5.2
-5.1
nitrogen source
D-Serine (N)
-0.3
+0.0
+0.1
-6.0
-4.8
sulfur source
M63 no sulfur + 5 mM sulfate
+0.2
-0.5
-0.1
-5.3
-5.3
carbon source
D-Sorbitol (C)
-0.3
-0.1
-0.0
-4.9
-5.6
nitrogen source
L-Glutamine (N)
-0.4
+0.1
+0.2
-5.5
-5.1
carbon source
acetate (C)
-0.9
+0.4
-0.8
-4.5
-4.9
carbon source
D-Sorbitol (C)
-0.2
-0.1
+0.1
-5.5
-4.9
carbon source
D-Glucosamine Hydrochloride (C)
-0.2
+0.3
+0.1
-5.7
-5.1
carbon source
D-Glucosamine Hydrochloride (C)
-0.4
+0.5
+0.1
-5.3
-5.4
nitrogen source
L-Glutamine (N)
-0.3
+0.1
+0.0
-5.8
-4.5
nitrogen source
Putrescine (N)
-0.4
+0.2
-0.3
-5.5
-4.4
carbon source
D-Trehalose (C)
-0.5
+0.1
+0.2
-5.0
-5.2
carbon source
D-Trehalose (C)
-0.4
-0.0
+0.3
-5.1
-5.0
nitrogen source
Glycine (N)
-0.2
+0.0
+0.5
-5.2
-5.2
carbon source
D-Ribose (C)
-0.2
+0.3
+0.1
-5.1
-5.3
nitrogen source
D-Alanine (N)
+0.0
+0.3
+0.2
-5.3
-5.1
carbon source
D-Mannose (C)
-0.2
+0.2
+0.3
-5.2
-5.0
carbon source
L-Malic (C)
-0.7
+0.4
+0.1
-4.7
-4.9
carbon source
a-Ketoglutaric (C)
+0.0
+0.2
+0.4
-5.0
-5.0
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