Fitness for 5 genes in Escherichia coli BW25113

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500 ntyceP and dinI are separated by 286 nucleotidesdinI and pyrC are separated by 73 nucleotidespyrC and yceB are separated by 105 nucleotidesyceB and grxB are separated by 133 nucleotides b1060: yceP - orf, hypothetical protein (VIMSS), at 1,119,924 to 1,120,178 yceP b1061: dinI - DNA damage-inducible protein I (NCBI), at 1,120,465 to 1,120,710 dinI b1062: pyrC - dihydroorotase (NCBI), at 1,120,784 to 1,121,830 pyrC b1063: yceB - predicted lipoprotein (NCBI), at 1,121,936 to 1,122,496 yceB b1064: grxB - glutaredoxin 2 (Grx2) (NCBI), at 1,122,630 to 1,123,277 grxB
Group Condition b1060 b1061 b1062 b1063 b1064
yceP dinI pyrC yceB grxB
carbon source Ying_OrganicAcid7 rep A; time point 3 -1.7 -0.1 -8.0 -0.5 -0.1
carbon source Ying_AminoAcid20 rep A; time point 3 -0.9 -0.3 -8.7 -0.3 -0.1
carbon source Ying_sugar7 rep B; time point 3 -0.8 -0.1 -8.5 -0.6 -0.2
carbon source Ying_sugar7 rep C; time point 2 -0.5 -0.2 -8.4 -0.6 -0.1
carbon source Ying_OrganicAcid7 rep B; time point 3 -1.3 -0.2 -7.9 -0.2 +0.1
carbon source Ying_sugar7 rep B; time point 2 -0.7 -0.1 -8.4 -0.2 -0.2
carbon source Ying_sugar7 rep C; time point 3 -0.9 -0.0 -8.4 +0.1 -0.3
carbon source Ying_sugar7 rep A; time point 3 -0.7 -0.3 -8.5 +0.2 -0.3
carbon source carbon source D-Glucose 5mM -1.3 -0.4 -6.1 -1.5 -0.1
carbon source Ying_AminoAcid20 rep C; time point 3 -1.1 -0.3 -7.7 -0.2 -0.1
carbon source Ying_AminoAcid20 rep B; time point 2 -0.6 -0.2 -8.2 -0.3 +0.0
carbon source Ying_AminoAcid20 rep C; time point 2 -0.8 -0.1 -7.1 -0.3 -0.4
carbon source Ying_sugar7 rep A; time point 2 -0.2 -0.2 -8.1 -0.1 -0.0
carbon source Ying_AminoAcid20 rep B; time point 3 -0.8 -0.2 -7.2 -0.1 -0.3
msc 22hr_mediaonly_rep1_lowinoculum -0.1 -0.1 -7.4 -0.2 -0.5
carbon source Ying_AminoAcid20 rep A; time point 2 -1.1 +0.0 -6.7 -0.3 -0.1
carbon source Ying_OrganicAcid7 rep A; time point 2 -1.6 +0.1 -6.6 +0.0 +0.0
carbon source Ying_OrganicAcid7 rep C; time point 3 -1.5 -0.1 -6.3 +0.0 -0.1
carbon source carbon source D-Mannose 5mM -1.1 -0.3 -6.3 -0.0 -0.1
carbon source carbon source D-Mannose 0.5mM -0.5 -0.1 -7.2 +0.2 -0.1
carbon source carbon source D-Mannose 5mM -1.1 -0.1 -5.6 -1.0 +0.0
carbon source L-Malic (C) -1.5 -0.2 -4.5 -0.5 -0.9
M9 Glucose 2% aerobic -1.7 -0.1 -5.7 -0.0 +0.1
carbon source carbon source D-Glucose 20mM -1.2 +0.0 -5.6 -0.5 -0.0
carbon source carbon source D-Glucose 1mM -1.1 +0.2 -6.7 +0.1 +0.2
carbon source D-Galacturonic Acid (C) MOPS -2.6 -0.4 -3.5 -0.6 -0.2
sulfur source M63 no sulfur + 5 mM sulfate -0.0 -0.2 -6.2 +0.2 -0.5
carbon source carbon source D-Mannose 1mM -1.0 +0.3 -4.8 -0.3 -0.8
exudates RCH2_defined_glucose with Brachypodium distachyon 13-day exudates 0.5x +0.0 +0.2 -6.5 -0.3 +0.2
carbon source carbon source D-Glucose 0.5mM -1.0 +0.3 -5.8 +0.2 +0.4
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