Fitness for 5 genes in Escherichia coli BW25113

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500 ntcsgE and csgD are separated by 4 nucleotidescsgD and csgB are separated by 754 nucleotidescsgB and csgA are separated by 40 nucleotidescsgA and csgC are separated by 58 nucleotides b1039: csgE - predicted transport protein (NCBI), at 1,101,375 to 1,101,764 csgE b1040: csgD - DNA-binding transcriptional activator in two-component regulatory system (NCBI), at 1,101,769 to 1,102,419 csgD b1041: csgB - curlin nucleator protein, minor subunit in curli complex (NCBI), at 1,103,174 to 1,103,629 csgB b1042: csgA - cryptic curlin major subunit (NCBI), at 1,103,670 to 1,104,125 csgA b1043: csgC - predicted curli production protein (NCBI), at 1,104,184 to 1,104,516 csgC
Group Condition b1039 b1040 b1041 b1042 b1043
csgE csgD csgB csgA csgC
M9 Acetate 0.5% aerobic -0.5 -1.7 -0.5 -0.3 -0.1
phage Ste41 +0.3 +1.6 -0.5 -0.6 -0.1
micoeukaryotes Tetrahymena sp., Mixed culture-1 -0.4 +2.0 -0.8 -0.0 +0.0
carbon source Ying_Nucleobase14 rep A; time point 3 -0.4 +1.4 +0.6 +0.9 -0.0
carbon source Ying_Nucleobase14 rep C; time point 3 -0.5 +1.2 +0.9 +1.1 +0.1
phage Phage_N4_cage_3_mouse_4_Cecum_40 hr +0.7 +1.1 -0.1 +0.6 +0.5
phage Papa dilution 10-1 cacl2 maltose +0.4 +2.3 +0.4 +0.2 +0.0
carbon source Uridine 0.4095 mM (C) +0.3 +0.7 +1.2 +1.2 +0.7
carbon source Ying_Nucleobase14 rep B; time point 3 -0.2 +2.0 +1.2 +1.2 +0.3
carbon source Ying_Others16 rep B; time point 1 +0.9 +1.4 +1.4 +1.0 +0.2
carbon source Ying_Others16 rep C; time point 1 +1.2 +1.8 +1.1 +1.1 -0.0
carbon source Uridine 0.4095 mM (C) +0.7 +1.4 +1.5 +1.1 +0.5
carbon source Uridine 0.4095 mM (C) +0.8 +1.4 +1.4 +1.2 +0.9
carbon source Adenosine 0.3742 mM (C) +0.7 +1.4 +1.9 +1.9 -0.2
carbon source Guanosine 0.35306 mM (C) +1.1 +0.6 +2.0 +1.9 +0.5
carbon source Guanosine 0.35306 mM (C) +1.3 +1.2 +2.0 +2.1 +0.7
carbon source Inosine 0.3728 mM (C) +1.1 +1.6 +1.8 +2.1 +1.0
carbon source Inosine 0.3728 mM (C) +1.6 +1.7 +2.3 +2.2 -0.1
carbon source Guanosine 0.35306 mM (C) +1.6 +2.5 +2.3 +2.6 -0.3
carbon source Inosine 0.3728 mM (C) +1.5 +3.0 +2.4 +2.6 -0.3
carbon source LMW_DNA_from_Lysinibacillus_FW301-JW8 7.7 ppm (C) +0.8 +2.4 +3.0 +2.5 +0.6
carbon source Adenosine 0.3742 mM (C) +1.2 +2.8 +2.9 +2.6 -0.2
carbon source Adenosine 0.3742 mM (C) +1.3 +2.1 +2.9 +2.7 +0.4
carbon source LMW_DNA_from_Lysinibacillus_FW301-JW8 7.7 ppm (C) +1.0 +2.8 +3.6 +2.8 +0.5
carbon source Ying_Others16 rep A; time point 2 +2.3 +4.7 +1.8 +3.1 -0.4
carbon source LMW_DNA_from_Pseudomonas_EB271-B4-1 12 ppm (C) +1.4 +3.8 +3.4 +2.6 +0.3
carbon source Ying_Others16 rep B; time point 2 +1.8 +5.6 +1.6 +2.5 -0.0
carbon source LMW_DNA_from_Pseudomonas_EB271-B4-1 12 ppm (C) +1.2 +4.0 +4.1 +3.3 +0.8
carbon source LMW_DNA_from_Pseudomonas_EB271-B4-1 12 ppm (C) +1.7 +4.2 +4.7 +3.7 +0.2
carbon source LMW_DNA_from_Lysinibacillus_FW301-JW8 7.7 ppm (C) +1.5 +5.2 +5.2 +3.9 +0.4
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