Fitness for 5 genes in Escherichia coli BW25113

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500 ntcsgG and csgF are separated by 26 nucleotidescsgF and csgE are separated by 24 nucleotidescsgE and csgD are separated by 4 nucleotidescsgD and csgB are separated by 754 nucleotides b1037: csgG - outer membrane lipoprotein (NCBI), at 1,100,074 to 1,100,907 csgG b1038: csgF - predicted transport protein (NCBI), at 1,100,934 to 1,101,350 csgF b1039: csgE - predicted transport protein (NCBI), at 1,101,375 to 1,101,764 csgE b1040: csgD - DNA-binding transcriptional activator in two-component regulatory system (NCBI), at 1,101,769 to 1,102,419 csgD b1041: csgB - curlin nucleator protein, minor subunit in curli complex (NCBI), at 1,103,174 to 1,103,629 csgB
Group Condition b1037 b1038 b1039 b1040 b1041
csgG csgF csgE csgD csgB
stress LB Aerobic with Chlorhexidine diacetate salt 0.000000625 mM +0.5 -3.0 -0.2 -0.6 -0.5
phage Phage_N4_cage_3_mouse_3_Cecum_40 hr +0.1 -3.2 +0.4 -0.1 -0.4
micoeukaryotes Tetrahymena sp., Mixed culture-1 -0.1 +1.0 -0.4 +2.0 -0.8
carbon source Ying_Nucleobase14 rep C; time point 3 +1.0 +1.5 -0.5 +1.2 +0.9
carbon source Ying_sugar7 rep C; time point 3 +1.0 +1.6 +0.3 +0.4 +0.9
carbon source Ying_Nucleobase14 rep A; time point 3 +1.1 +1.5 -0.4 +1.4 +0.6
carbon source Ying_Others16 rep A; time point 1 +1.3 +1.8 +0.8 +0.4 +0.4
carbon source Uridine 0.4095 mM (C) +1.5 +1.7 +0.3 +0.7 +1.2
carbon source Ying_Nucleobase14 rep B; time point 3 +1.4 +1.6 -0.2 +2.0 +1.2
carbon source Ying_Others16 rep B; time point 1 +1.4 +1.6 +0.9 +1.4 +1.4
carbon source Uridine 0.4095 mM (C) +1.9 +1.8 +0.7 +1.4 +1.5
carbon source Uridine 0.4095 mM (C) +2.0 +2.1 +0.8 +1.4 +1.4
carbon source Guanosine 0.35306 mM (C) +2.0 +2.1 +1.1 +0.6 +2.0
carbon source Adenosine 0.3742 mM (C) +1.9 +1.9 +0.7 +1.4 +1.9
carbon source Ying_Others16 rep C; time point 1 +1.9 +2.0 +1.2 +1.8 +1.1
carbon source Inosine 0.3728 mM (C) +2.2 +2.4 +1.1 +1.6 +1.8
carbon source Guanosine 0.35306 mM (C) +2.5 +2.6 +1.3 +1.2 +2.0
carbon source Inosine 0.3728 mM (C) +2.6 +3.0 +1.6 +1.7 +2.3
carbon source Adenosine 0.3742 mM (C) +2.7 +2.7 +1.2 +2.8 +2.9
carbon source Guanosine 0.35306 mM (C) +2.8 +3.1 +1.6 +2.5 +2.3
carbon source Adenosine 0.3742 mM (C) +3.0 +3.5 +1.3 +2.1 +2.9
carbon source LMW_DNA_from_Lysinibacillus_FW301-JW8 7.7 ppm (C) +3.3 +3.4 +0.8 +2.4 +3.0
carbon source Inosine 0.3728 mM (C) +3.2 +3.1 +1.5 +3.0 +2.4
carbon source LMW_DNA_from_Lysinibacillus_FW301-JW8 7.7 ppm (C) +4.0 +4.0 +1.0 +2.8 +3.6
carbon source LMW_DNA_from_Pseudomonas_EB271-B4-1 12 ppm (C) +4.1 +4.2 +1.4 +3.8 +3.4
carbon source Ying_Others16 rep A; time point 2 +4.4 +4.8 +2.3 +4.7 +1.8
carbon source Ying_Others16 rep B; time point 2 +4.4 +4.9 +1.8 +5.6 +1.6
carbon source LMW_DNA_from_Pseudomonas_EB271-B4-1 12 ppm (C) +4.7 +4.8 +1.2 +4.0 +4.1
carbon source LMW_DNA_from_Pseudomonas_EB271-B4-1 12 ppm (C) +4.9 +5.1 +1.7 +4.2 +4.7
carbon source LMW_DNA_from_Lysinibacillus_FW301-JW8 7.7 ppm (C) +5.6 +5.7 +1.5 +5.2 +5.2
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