Fitness for 5 genes in Escherichia coli BW25113

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500 ntycdY and ycdZ are separated by 101 nucleotidesycdZ and csgG are separated by 63 nucleotidescsgG and csgF are separated by 26 nucleotidescsgF and csgE are separated by 24 nucleotides b1035: ycdY - hypothetical protein (NCBI), at 1,098,863 to 1,099,417 ycdY b1036: ycdZ - orf, hypothetical protein (VIMSS), at 1,099,519 to 1,100,010 ycdZ b1037: csgG - outer membrane lipoprotein (NCBI), at 1,100,074 to 1,100,907 csgG b1038: csgF - predicted transport protein (NCBI), at 1,100,934 to 1,101,350 csgF b1039: csgE - predicted transport protein (NCBI), at 1,101,375 to 1,101,764 csgE
Group Condition b1035 b1036 b1037 b1038 b1039
ycdY ycdZ csgG csgF csgE
carbon source carbon source D-Glucose 0.25mM -0.7 -1.0 -0.1 -3.1 -0.6
phage Phage_N4_cage_3_mouse_3_Cecum_40 hr +0.1 -0.3 +0.1 -3.2 +0.4
stress LB Aerobic with Chlorhexidine diacetate salt 0.000000625 mM -0.3 +0.3 +0.5 -3.0 -0.2
carbon source Ying_Nucleobase14 rep C; time point 3 +0.3 -0.9 +1.0 +1.5 -0.5
carbon source Ying_Nucleobase14 rep B; time point 3 +0.2 -0.8 +1.4 +1.6 -0.2
carbon source Uridine 0.4095 mM (C) +0.4 -0.5 +1.5 +1.7 +0.3
carbon source Ying_Others16 rep B; time point 1 -0.1 -0.1 +1.4 +1.6 +0.9
carbon source Ying_Others16 rep A; time point 1 +0.3 +0.0 +1.3 +1.8 +0.8
carbon source Adenosine 0.3742 mM (C) -0.1 -0.2 +1.9 +1.9 +0.7
carbon source Uridine 0.4095 mM (C) +0.5 -0.3 +1.9 +1.8 +0.7
carbon source Uridine 0.4095 mM (C) +0.5 -0.7 +2.0 +2.1 +0.8
carbon source Guanosine 0.35306 mM (C) -0.2 +0.0 +2.0 +2.1 +1.1
carbon source Ying_Others16 rep C; time point 1 +0.3 +0.0 +1.9 +2.0 +1.2
carbon source Inosine 0.3728 mM (C) +0.1 -0.2 +2.2 +2.4 +1.1
stress 1-ethyl-3-methylimidazolium chloride 40 mM +0.8 +4.5 +0.4 -0.1 +0.4
carbon source Guanosine 0.35306 mM (C) -0.1 -0.2 +2.5 +2.6 +1.3
carbon source Adenosine 0.3742 mM (C) +0.1 -0.1 +2.7 +2.7 +1.2
carbon source Inosine 0.3728 mM (C) +0.2 -0.1 +2.6 +3.0 +1.6
carbon source LMW_DNA_from_Lysinibacillus_FW301-JW8 7.7 ppm (C) +0.1 -0.1 +3.3 +3.4 +0.8
carbon source Guanosine 0.35306 mM (C) +0.1 -0.0 +2.8 +3.1 +1.6
carbon source Adenosine 0.3742 mM (C) -0.0 -0.1 +3.0 +3.5 +1.3
stress 1-ethyl-3-methylimidazolium chloride 80 mM +0.8 +6.5 +0.3 +0.2 +0.1
carbon source Inosine 0.3728 mM (C) +0.0 +0.0 +3.2 +3.1 +1.5
carbon source LMW_DNA_from_Lysinibacillus_FW301-JW8 7.7 ppm (C) +0.4 -0.2 +4.0 +4.0 +1.0
carbon source LMW_DNA_from_Pseudomonas_EB271-B4-1 12 ppm (C) +0.2 +0.1 +4.1 +4.2 +1.4
carbon source LMW_DNA_from_Pseudomonas_EB271-B4-1 12 ppm (C) +0.0 -0.0 +4.7 +4.8 +1.2
carbon source Ying_Others16 rep B; time point 2 +0.1 +0.0 +4.4 +4.9 +1.8
carbon source Ying_Others16 rep A; time point 2 +0.3 -0.4 +4.4 +4.8 +2.3
carbon source LMW_DNA_from_Pseudomonas_EB271-B4-1 12 ppm (C) +0.1 +0.0 +4.9 +5.1 +1.7
carbon source LMW_DNA_from_Lysinibacillus_FW301-JW8 7.7 ppm (C) +0.3 +0.2 +5.6 +5.7 +1.5
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