Fitness for 5 genes in Escherichia coli BW25113

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500 ntycdQ and ycdR overlap by 8 nucleotidesycdR and ycdS are separated by 8 nucleotidesycdS and ycdT are separated by 586 nucleotidesycdT and insF-4 are separated by 40 nucleotides b1022: ycdQ - predicted glycosyl transferase (NCBI), at 1,085,744 to 1,087,069 ycdQ b1023: ycdR - predicted enzyme associated with biofilm formation (NCBI), at 1,087,062 to 1,089,080 ycdR b1024: ycdS - predicted outer membrane protein (NCBI), at 1,089,089 to 1,091,512 ycdS b1025: ycdT - predicted diguanylate cyclase (NCBI), at 1,092,099 to 1,093,457 ycdT b1026: insF-4 - IS3 element protein InsF (NCBI), at 1,093,498 to 1,094,364 insF-4
Group Condition b1022 b1023 b1024 b1025 b1026
ycdQ ycdR ycdS ycdT insF-4
phage Phage_N4_cage_3_mice _Feces_40 hr +0.1 -0.0 +0.1 -3.7 N.D.
M9 Acetate 0.5% aerobic -0.5 -0.8 -0.5 -1.4 N.D.
M9 Acetate 0.5% aerobic -0.4 -0.7 -0.5 -1.5 N.D.
carbon source carbon source D-Glucose 0.25mM -0.3 -0.3 +0.1 -2.7 N.D.
predation 3 hr rep1_Tiberius_no_dilution -0.4 -0.3 -0.2 -2.1 N.D.
M9 Glucose 2%, 20 mM NO3- anaerobic -0.5 -0.8 -0.4 -1.1 N.D.
M9 Glucose 2% anaerobic -0.5 -0.7 -0.3 -1.3 N.D.
phage TP4 -0.2 -0.3 -0.3 -1.9 N.D.
mzaabcde mzaABCDE +0.1 -0.6 -0.3 -2.0 N.D.
nophagecontrol NoPhageControl -0.3 -0.2 +0.0 -2.2 N.D.
M9 Glucose 2% aerobic -0.5 -0.6 -0.3 -1.1 N.D.
phage Phage_N4_cage_3_mice _Feces_22 hr +0.0 -0.2 +0.1 -2.6 N.D.
phage Bas83 -0.2 -0.1 +0.0 -2.4 N.D.
phage T7_phage 0.00015625 MOI TC3 -0.3 -0.3 +0.0 -2.0 N.D.
phage Phage_N4_cage_3_mouse_1_Cecum_40 hr +0.0 -0.2 +0.2 -2.6 N.D.
predation 18 hr rep1_Tiberius_10fold_dilution -0.0 -0.2 -0.2 -2.2 N.D.
phage Phage_N4_cage_3_mouse_2_Cecum_40 hr +0.3 -0.0 +0.0 -2.9 N.D.
M9 Glucose 2% aerobic -0.4 -0.6 -0.3 -1.3 N.D.
plasmid transformation mariner vector transformation; liquid outgrowth assay -0.2 +0.2 -0.3 -2.1 N.D.
predation 3 hr rep1_HD100_no_dilution -0.2 -0.2 -0.3 -1.7 N.D.
phage Phage_N4_cage_3_mouse_4_Cecum_40 hr +0.1 -0.2 +0.1 -2.3 N.D.
phage Goslar -0.2 -0.3 +0.1 -1.8 N.D.
predation 48 hr rep1_HD100_no_dilution +0.0 +0.2 +0.1 -2.3 N.D.
msc 6hr_mediaonly_rep1_lowinoculum +0.1 -0.1 +0.3 -2.3 N.D.
phage Mpec16 +0.0 +0.1 +0.2 -2.3 N.D.
msc 22hr_mediaonly_rep1_lowinoculum +0.2 -0.0 +0.1 -2.2 N.D.
control PBS_cage_2_mouse_2_Cecum_40 hr +0.5 +0.2 +0.3 -1.9 N.D.
carbon source carbon source D-Mannose 0.5mM -0.6 -0.3 -0.6 +1.2 N.D.
phage N4_phage 0.009375 MOI TC2 +0.3 +0.9 +0.3 +0.8 N.D.
stress Trimethoprim 0.005 mM +0.6 +0.8 +0.2 +1.2 N.D.
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