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Protein
Homologs
Fitness for 5 genes in
Escherichia coli BW25113
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500 nt
yccT and b0965 are separated by 172 nucleotides
b0965 and hspQ are separated by 44 nucleotides
hspQ and yccW are separated by 57 nucleotides
yccW and yccX are separated by 94 nucleotides
b0964: yccT - hypothetical protein (NCBI), at 1,026,334 to 1,026,996
yccT
b0965: b0965 - orf, hypothetical protein (VIMSS), at 1,027,169 to 1,027,582
b0965
b0966: hspQ - DNA-binding protein, hemimethylated (RefSeq), at 1,027,627 to 1,027,944
hspQ
b0967: yccW - predicted methyltransferase (RefSeq), at 1,028,002 to 1,029,192
yccW
b0968: yccX - predicted acylphosphatase (NCBI), at 1,029,287 to 1,029,565
yccX
Group
Condition
b0964
b0965
b0966
b0967
b0968
yccT
b0965
hspQ
yccW
yccX
phage
Ste41
-0.8
-1.0
-0.8
-0.5
-0.4
phage
N4_phage 0.00009375 MOI TC4
-1.2
-0.6
-1.0
+0.4
-0.5
carbon source
Guanosine 0.35306 mM (C)
-1.0
-0.9
-0.2
+0.0
-0.8
carbon source
Adenosine 0.3742 mM (C)
-1.8
+0.1
-0.4
-0.4
-0.2
carbon source
carbon source D-Glucose 20mM
-0.3
-1.9
+0.0
-0.4
+0.1
phage
R1_N4_T2_phage8
-0.4
-0.5
+0.5
-0.1
-1.6
carbon source
carbon source D-Glucose 0.25mM
-0.7
-1.4
-0.1
-0.1
+0.3
attachment_assay_attached_sample
Time0_Wash=PBS; Attachment_time=2hrs; Attachment_surface=PDMS; Sample_type=attached; Outgrowth=LB
+0.3
-1.1
+0.3
-0.0
-1.1
carbon source
Ying_Nucleobase14 rep B; time point 3
-1.7
+0.7
-0.0
+0.1
-0.0
carbon source
Acetate (C)
+0.1
+0.4
-0.9
+0.3
-0.8
carbon source
Acetate (C)
+0.0
-0.4
-1.3
+0.5
+0.4
carbon source
Uridine 0.4095 mM (C)
-1.8
+0.5
+0.3
+0.1
+0.3
phage
Δdbn_10
+0.2
-0.7
+0.9
-0.2
-0.8
carbon source
carbon source D-Mannose 1mM
-1.0
-0.4
+0.8
+0.0
+0.4
stress
Ciprofloxacin Hydrochloride 0.0003 mM
-0.9
+0.5
-0.6
+0.3
+0.6
stress
methylglyoxal 0.008 vol%
+0.4
-0.7
-0.5
+0.5
+0.5
stress
5-Hydroxymethylfurfural 20 mM
+0.9
-0.5
-0.4
+0.4
+0.2
stress
LB Aerobic with Nitrofurantoin 0.00003125 mM
+1.0
-1.0
+0.7
+0.4
+0.1
stress
Benzalkonium Chloride 0.004 mg/ml
+1.0
-1.1
-0.3
+1.0
+0.5
stress
LB Anaerobic with Cephalothin 0.0000078125 mM
-0.0
+1.7
-0.4
-0.4
+0.6
stress
Bacitracin 0.5 mg/ml
+0.5
+1.2
-0.7
+0.3
+0.2
stress
Bacitracin 1 mg/ml
+0.5
+1.6
-0.5
+0.1
+0.0
stress
Carbenicillin 0.004 mg/ml
+0.8
+0.9
-0.5
+0.3
+0.2
stress
Tetracycline 0.0008 mg/ml
+0.5
+1.6
-0.6
+0.3
-0.0
stress
Dimethyl Sulfoxide 7.5 vol%
+1.1
+0.4
-0.2
+0.5
+0.5
phage
R2_N4_T2_phage10
-0.2
+1.5
-0.0
+0.2
+0.7
stress
acetate 140 mM
+1.0
+0.7
-0.1
+0.5
+0.3
stress
Cephalothin 0.01 mg/ml
-0.2
+2.6
-0.2
+0.0
+0.2
motility
inner cut, LB soft agar motility assay
+0.2
+2.1
+0.0
+0.8
+0.3
stress
Carbenicillin 0.008 mg/ml
+0.2
+3.4
-0.5
+0.1
+0.3
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