Fitness for 5 genes in Escherichia coli BW25113

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500 ntycbY and uup are separated by 11 nucleotidesuup and pqiA are separated by 129 nucleotidespqiA and pqiB are separated by 4 nucleotidespqiB and ymbA overlap by 4 nucleotides b0948: ycbY - predicted methyltransferase (NCBI), at 1,007,067 to 1,009,175 ycbY b0949: uup - fused predicted transporter subunits of ABC superfamily: ATP-binding components (NCBI), at 1,009,187 to 1,011,094 uup b0950: pqiA - paraquat-inducible membrane protein A (NCBI), at 1,011,224 to 1,012,477 pqiA b0951: pqiB - paraquat-inducible protein B (NCBI), at 1,012,482 to 1,014,122 pqiB b0952: ymbA - conserved protein (RefSeq), at 1,014,119 to 1,014,682 ymbA
Group Condition b0948 b0949 b0950 b0951 b0952
ycbY uup pqiA pqiB ymbA
stress LB Anaerobic with Benzethonium chloride 0.00003125 mM +0.5 -3.6 -3.3 -3.5 -4.3
stress Benzalkonium Chloride 0.004 mg/ml +0.1 -1.6 -2.7 -1.7 -2.5
stress octanol 0.08 vol% -0.6 -0.9 -2.7 -1.3 -2.1
stress LB Anaerobic with Benzethonium chloride 0.000015625 mM -0.4 -2.2 -1.1 -1.5 -2.0
stress LB Aerobic with Benzethonium chloride 0.000015625 mM -0.3 -0.3 -2.0 -2.6 -2.0
lb LB regrowth after 48hrs -1.1 -6.0 +0.1 -0.0 +0.0
lb LB regrowth after 48hrs -1.2 -5.7 -0.1 +0.0 +0.1
stress decyl alcohol 5 vol% -0.4 -2.3 -1.3 -1.0 -1.5
motility outer cut, LB soft agar motility assay -2.3 -4.6 -0.3 +0.2 +0.6
phage Phage_N4_cage_3_mouse_3_Cecum_40 hr -1.1 -5.4 +0.1 +0.1 +0.2
stress LB + ciprofloxacin regrowth after 48hrs -1.0 -5.3 +0.0 +0.1 +0.2
stress Cisplatin 0.1 mg/ml -1.5 -3.6 -0.0 -0.1 -0.5
stress Cisplatin 0.1 mg/ml -1.3 -3.3 -0.4 -0.2 -0.4
stress decyl alcohol 5 vol% -0.5 -2.4 -0.9 -0.8 -0.9
stress Cisplatin 0.1 mg/ml -1.1 -3.5 -0.1 -0.3 -0.2
stress LB Aerobic with Benzethonium chloride 0.000015625 mM -0.1 -0.2 -1.6 -2.0 -1.2
stress LB Anaerobic with Benzethonium chloride 0.000015625 mM -0.2 -2.3 -0.8 -1.0 -0.8
stress LB Aerobic with Ramoplanin 0.000125 mM -0.2 -0.3 -1.1 -1.2 -2.1
stress Cisplatin 0.05 mg/ml -1.3 -3.6 +0.1 -0.2 +0.2
phage Phage_N4_cage_4_mouse_1_Cecum_40 hr -0.9 -3.0 -0.4 -0.4 -0.1
gfp_control GFP_control -0.8 -2.3 -0.9 +0.1 -0.5
stress Butyrolactam 3 vol% -0.9 -3.9 +0.1 +0.2 +0.2
control PBS_cage_1_mouse_2_Cecum_40 hr -0.8 -3.4 -0.1 -0.4 +0.5
stress Cisplatin 0.1 mg/ml -1.6 -2.6 +0.4 +0.0 -0.3
stress Bacitracin 1 mg/ml -0.4 -3.9 -0.1 +0.4 +0.1
stress Bacitracin 0.5 mg/ml -0.6 -3.5 -0.2 +0.2 +0.4
stress LB Anaerobic with Vancomycin Hydrochloride from Streptomyces orientalis 0.00003125 mM -0.6 -4.1 +0.4 +0.6 +0.2
phage Phage_N4_cage_3_mouse_4_Cecum_40 hr -0.9 -3.4 +0.7 -0.1 +0.2
stress LB Anaerobic with Vancomycin Hydrochloride from Streptomyces orientalis 0.00003125 mM -0.6 -4.3 +0.6 +0.6 +0.6
motility inner cut, LB soft agar motility assay -0.2 -2.9 +0.6 +0.6 -0.5
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