Fitness for 5 genes in Escherichia coli BW25113

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500 ntserW and infA are separated by 253 nucleotidesinfA and aat are separated by 284 nucleotidesaat and cydC are separated by 41 nucleotidescydC and cydD are separated by 0 nucleotides b0883: serW - tRNA-Ser (NCBI), at 925,107 to 925,194 serW b0884: infA - translation initiation factor IF-1 (NCBI), at 925,448 to 925,666 infA b0885: aat - leucyl/phenylalanyl-tRNA--protein transferase (NCBI), at 925,951 to 926,655 aat b0886: cydC - fused cysteine transporter subunits of ABC superfamily: membrane component/ATP-binding component (NCBI), at 926,697 to 928,418 cydC b0887: cydD - fused cysteine transporter subunits of ABC superfamily: membrane component/ATP-binding component (NCBI), at 928,419 to 930,185 cydD
Group Condition b0883 b0884 b0885 b0886 b0887
serW infA aat cydC cydD
phage Δdbn_10 N.D. N.D. -0.8 N.D. N.D.
stress LB Anaerobic with Ceftriaxone hemi(heptahydrate) 0.000000625 mM N.D. N.D. -0.7 N.D. N.D.
stress LB Anaerobic with Cephalothin 0.0000078125 mM N.D. N.D. -0.7 N.D. N.D.
stress Aluminum chloride 5 mM N.D. N.D. -0.6 N.D. N.D.
control PBS_cage_2_mouse_3_Cecum_40 hr N.D. N.D. -0.6 N.D. N.D.
vitamin control M9 N.D. N.D. -0.6 N.D. N.D.
phage R2_N4_T2_phage10 N.D. N.D. -0.6 N.D. N.D.
stress LB Anaerobic with Ticarcillin 0.000015625 mM N.D. N.D. -0.6 N.D. N.D.
protonated/deuterated deuterated glucose in D2O N.D. N.D. -0.6 N.D. N.D.
carbon source L-Fucose (C) N.D. N.D. -0.6 N.D. N.D.
vitamin M9 with Pyridoxine HCl 100 nM and 4-Deoxypyridoxine 25 uM N.D. N.D. -0.6 N.D. N.D.
carbon source L-Fucose (C) N.D. N.D. -0.6 N.D. N.D.
control NoPhage N.D. N.D. -0.5 N.D. N.D.
stress Bacitracin 1 mg/ml N.D. N.D. -0.5 N.D. N.D.
carbon source carbon source D-Glucose 20mM N.D. N.D. -0.5 N.D. N.D.
stress LB Anaerobic with Furaltadone 0.000015625 mM N.D. N.D. -0.5 N.D. N.D.
stress Chlorite 1.25 mM N.D. N.D. +0.5 N.D. N.D.
phage Phage_N4_cage_4_mice _Feces_40 hr N.D. N.D. +0.5 N.D. N.D.
carbon source Ying_Others16 rep A; time point 2 N.D. N.D. +0.5 N.D. N.D.
stress LB Anaerobic with Spiramycin 0.000125 mM N.D. N.D. +0.5 N.D. N.D.
lb LB N.D. N.D. +0.5 N.D. N.D.
stress LB Anaerobic with Oxytetracycline 0.0000003125 mM N.D. N.D. +0.6 N.D. N.D.
stress LB Anaerobic with Sulfamonomethoxine 0.00003125 mM N.D. N.D. +0.6 N.D. N.D.
control PBS_cage_1_mice _Feces_22 hr N.D. N.D. +0.6 N.D. N.D.
stress Carbenicillin 0.008 mg/ml N.D. N.D. +0.6 N.D. N.D.
plasmid transformation mariner vector transformation; liquid outgrowth assay N.D. N.D. +0.6 N.D. N.D.
phage Phage_N4_cage_3_mouse_3_Cecum_40 hr N.D. N.D. +0.7 N.D. N.D.
stress Benzalkonium Chloride 0.004 mg/ml N.D. N.D. +0.7 N.D. N.D.
stress Cisplatin 0.1 mg/ml N.D. N.D. +0.7 N.D. N.D.
stress LB Aerobic with Chlorhexidine diacetate salt 0.000000625 mM N.D. N.D. +0.8 N.D. N.D.
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