Fitness for 5 genes in Escherichia coli BW25113

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500 ntybjD and ybjX overlap by 4 nucleotidesybjX and b0878 are separated by 114 nucleotidesb0878 and macB overlap by 4 nucleotidesmacB and cspD are separated by 72 nucleotides b0876: ybjD - conserved protein with nucleoside triphosphate hydrolase domain (NCBI), at 915,696 to 917,354 ybjD b0877: ybjX - hypothetical protein (NCBI), at 917,351 to 918,343 ybjX b0878: b0878 - putative membrane protein (VIMSS), at 918,458 to 919,573 b0878 b0879: macB - fused macrolide transporter subunits of ABC superfamily: ATP-binding component/membrane component (NCBI), at 919,570 to 921,516 macB b0880: cspD - cold shock protein homolog (NCBI), at 921,589 to 921,813 cspD
Group Condition b0876 b0877 b0878 b0879 b0880
ybjD ybjX b0878 macB cspD
carbon source carbon source D-Glucose 0.25mM +0.0 -0.2 +0.1 +0.1 -5.8
micoeukaryotes Tetrahymena sp., Mixed culture-1 -0.2 +0.1 +0.3 -0.1 -5.5
carbon source carbon source D-Mannose 5mM -0.5 -0.1 -0.5 -0.2 -3.6
phage Δdbn_10 +0.0 -0.0 +0.2 -0.3 -4.7
phage TP4 -0.6 -0.5 -0.8 +0.0 -2.1
stress Benzalkonium Chloride 0.004 mg/ml -0.3 -3.3 +0.8 +0.6 -1.4
phage RB68 -0.1 -0.6 +0.1 -0.1 -2.4
stress LB Anaerobic with Benzethonium chloride 0.00003125 mM -0.2 -3.8 +0.1 +0.1 +0.9
phage RB68 -0.2 -0.7 +0.2 -0.4 -1.5
control PBS_cage_1_mouse_1_Cecum_40 hr +0.3 -0.5 +0.3 -0.4 -2.2
phage Ste41 +0.7 +0.3 -1.7 -0.6 -1.2
stress LB Aerobic with Ramoplanin 0.000125 mM -0.0 -3.6 +1.2 +1.3 -1.1
stress LB Aerobic with Ramoplanin 0.000125 mM -0.1 -3.6 +1.0 +1.1 -0.5
stress Doxycycline hyclate 0.001 mg/ml +0.3 -2.0 +0.8 -0.0 -1.1
stress LB Anaerobic with Cephalothin 0.0000078125 mM -0.4 -1.8 -0.2 -0.1 +0.9
carbon source carbon source D-Mannose 5mM -0.2 +0.3 +0.3 -0.1 -1.7
stress Cephalothin 0.01 mg/ml +0.2 -1.7 +0.4 +0.1 -0.4
nophagecontrol R1_N4_T1_phage0 +0.2 +0.3 -0.6 +0.2 -1.1
stress LB Anaerobic with Ampicillin 0.00000195313 mM +0.2 -0.4 +0.9 -0.2 -1.4
control PBS_cage_2_mouse_1_Cecum_40 hr +0.3 -0.7 +0.4 +0.2 -0.9
phage T7_phage 0.00015625 MOI TC2 +0.1 +0.7 -0.5 +0.1 -1.0
stress LB Anaerobic with Cephalothin 0.0000078125 mM +0.2 -1.4 -0.1 +0.0 +1.0
stress LB Anaerobic with Chlorhexidine diacetate salt 0.000000625 mM -0.5 -0.7 +0.2 +0.2 +0.9
stress Chlorite 0.4 mM +0.4 +0.3 +0.7 -0.2 -1.0
stress Cisplatin 0.1 mg/ml +0.1 +0.5 -0.6 -0.6 +1.1
phage R2_N4_T1_phage10 +0.3 -0.7 -1.0 +0.0 +2.2
motility outer cut, LB soft agar motility assay -0.5 +0.5 -0.2 -0.0 +1.2
stress Bacitracin 0.5 mg/ml +0.1 +1.2 -0.4 -0.7 +1.0
plasmid transformation mariner vector transformation; liquid outgrowth assay -0.3 -0.2 +0.4 +0.5 +1.1
stress Bacitracin 1 mg/ml +0.4 +4.3 -1.2 -2.2 +0.5
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