Fitness for 5 genes in Escherichia coli BW25113

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500 ntartM and artQ overlap by 1 nucleotidesartQ and artI are separated by 6 nucleotidesartI and artP are separated by 17 nucleotidesartP and ybjP are separated by 217 nucleotides b0861: artM - arginine transporter subunit (NCBI), at 900,089 to 900,757 artM b0862: artQ - arginine transporter subunit (NCBI), at 900,757 to 901,473 artQ b0863: artI - arginine transporter subunit (NCBI), at 901,480 to 902,211 artI b0864: artP - arginine transporter subunit (NCBI), at 902,229 to 902,957 artP b0865: ybjP - predicted lipoprotein (NCBI), at 903,175 to 903,690 ybjP
Group Condition b0861 b0862 b0863 b0864 b0865
artM artQ artI artP ybjP
carbon source Ying_Nucleobase14 rep A; time point 3 -0.2 -0.4 -1.8 -0.5 -0.2
carbon source Ying_Nucleobase14 rep B; time point 3 -0.6 -0.3 -2.0 +0.1 -0.2
carbon source Ying_Nucleobase14 rep C; time point 3 -0.1 -0.1 -1.7 -0.6 -0.4
plasmid transformation vcDART vector transformation; liquid outgrowth assay -0.7 -0.9 -0.5 -0.3 -0.4
plasmid transformation vcDART vector transformation; liquid outgrowth assay -0.9 -1.3 +0.1 -0.1 -0.6
stress Trimethoprim 0.005 mM -0.4 -0.0 -0.5 -0.7 -1.0
carbon source Ying_Nucleobase14 rep B; time point 1 -0.2 -0.3 -1.3 -0.6 -0.2
phage Ste41 -0.0 +0.3 -0.8 -0.9 -1.2
carbon source carbon source D-Glucose 20mM -0.3 -0.9 -0.8 -0.3 -0.2
phage Ste41 -0.8 +0.1 +0.5 -1.1 -1.1
plasmid transformation mariner vector transformation; liquid outgrowth assay -0.5 -0.8 -0.4 -0.1 -0.7
stress 1-ethyl-3-methylimidazolium chloride 40 mM -0.4 -0.7 -0.5 -0.8 +0.1
phage Phage_N4_cage_3_mouse_3_Cecum_40 hr -0.4 -0.2 -0.2 -1.8 +0.6
control PBS_cage_2_mouse_3_Cecum_40 hr -0.3 -0.4 -0.7 -0.9 +0.8
control PBS_cage_2_mouse_1_Cecum_40 hr -0.3 -0.9 -0.3 -0.4 +0.6
phage T7_phage 0.00015625 MOI TC3 -0.2 -0.9 -0.1 +0.7 -0.8
phage T7_phage 0.00015625 MOI TC4 -0.1 +0.8 +0.4 -1.6 -0.7
phage phage +0.2 +0.7 -0.3 -0.8 -0.8
plasmid transformation vcDART vector transformation; liquid outgrowth assay -0.7 +1.3 -0.4 -0.5 -0.3
carbon source carbon source D-Mannose 5mM -0.1 +1.3 -0.7 -0.2 -0.5
predation 6 hr rep2_HD100_10fold_dilution_grewON -0.7 +1.0 -0.2 -0.6 +0.2
stress Chlorite 1.25 mM -0.7 -0.7 +0.4 +0.2 +0.8
stress LB Anaerobic with Furaltadone 0.000015625 mM -0.5 -0.7 +0.2 +0.5 +0.5
nophagecontrol R1_N4_T1_phage0 -0.7 -0.4 +0.5 +0.4 +0.5
stress LB Aerobic with Irgasan 0.0000003125 mM -0.3 -0.8 +0.5 -0.0 +1.0
stress octanol 0.08 vol% +0.4 -0.9 -0.2 +0.4 +0.9
control PBS_cage_1_mouse_1_Cecum_40 hr -0.1 +0.9 -0.7 -0.3 +1.0
phage R2_N4_T1_phage10 -0.7 +1.0 +0.2 +0.9 -0.4
motility outer cut, LB soft agar motility assay -0.5 +0.5 +0.3 +1.3 +0.2
stress LB Anaerobic with Ciprofloxacin Hydrochloride 0.0000000390625 mM +0.3 +1.2 +0.3 +0.6 +0.2
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