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Fitness for 5 genes in
Escherichia coli BW25113
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500 nt
artM and artQ overlap by 1 nucleotides
artQ and artI are separated by 6 nucleotides
artI and artP are separated by 17 nucleotides
artP and ybjP are separated by 217 nucleotides
b0861: artM - arginine transporter subunit (NCBI), at 900,089 to 900,757
artM
b0862: artQ - arginine transporter subunit (NCBI), at 900,757 to 901,473
artQ
b0863: artI - arginine transporter subunit (NCBI), at 901,480 to 902,211
artI
b0864: artP - arginine transporter subunit (NCBI), at 902,229 to 902,957
artP
b0865: ybjP - predicted lipoprotein (NCBI), at 903,175 to 903,690
ybjP
Group
Condition
b0861
b0862
b0863
b0864
b0865
artM
artQ
artI
artP
ybjP
carbon source
Ying_Nucleobase14 rep A; time point 3
-0.2
-0.4
-1.8
-0.5
-0.2
carbon source
Ying_Nucleobase14 rep B; time point 3
-0.6
-0.3
-2.0
+0.1
-0.2
carbon source
Ying_Nucleobase14 rep C; time point 3
-0.1
-0.1
-1.7
-0.6
-0.4
plasmid transformation
vcDART vector transformation; liquid outgrowth assay
-0.7
-0.9
-0.5
-0.3
-0.4
plasmid transformation
vcDART vector transformation; liquid outgrowth assay
-0.9
-1.3
+0.1
-0.1
-0.6
stress
Trimethoprim 0.005 mM
-0.4
-0.0
-0.5
-0.7
-1.0
carbon source
Ying_Nucleobase14 rep B; time point 1
-0.2
-0.3
-1.3
-0.6
-0.2
phage
Ste41
-0.0
+0.3
-0.8
-0.9
-1.2
carbon source
carbon source D-Glucose 20mM
-0.3
-0.9
-0.8
-0.3
-0.2
phage
Ste41
-0.8
+0.1
+0.5
-1.1
-1.1
plasmid transformation
mariner vector transformation; liquid outgrowth assay
-0.5
-0.8
-0.4
-0.1
-0.7
stress
1-ethyl-3-methylimidazolium chloride 40 mM
-0.4
-0.7
-0.5
-0.8
+0.1
phage
Phage_N4_cage_3_mouse_3_Cecum_40 hr
-0.4
-0.2
-0.2
-1.8
+0.6
control
PBS_cage_2_mouse_3_Cecum_40 hr
-0.3
-0.4
-0.7
-0.9
+0.8
control
PBS_cage_2_mouse_1_Cecum_40 hr
-0.3
-0.9
-0.3
-0.4
+0.6
phage
T7_phage 0.00015625 MOI TC3
-0.2
-0.9
-0.1
+0.7
-0.8
phage
T7_phage 0.00015625 MOI TC4
-0.1
+0.8
+0.4
-1.6
-0.7
phage
phage
+0.2
+0.7
-0.3
-0.8
-0.8
plasmid transformation
vcDART vector transformation; liquid outgrowth assay
-0.7
+1.3
-0.4
-0.5
-0.3
carbon source
carbon source D-Mannose 5mM
-0.1
+1.3
-0.7
-0.2
-0.5
predation
6 hr rep2_HD100_10fold_dilution_grewON
-0.7
+1.0
-0.2
-0.6
+0.2
stress
Chlorite 1.25 mM
-0.7
-0.7
+0.4
+0.2
+0.8
stress
LB Anaerobic with Furaltadone 0.000015625 mM
-0.5
-0.7
+0.2
+0.5
+0.5
nophagecontrol
R1_N4_T1_phage0
-0.7
-0.4
+0.5
+0.4
+0.5
stress
LB Aerobic with Irgasan 0.0000003125 mM
-0.3
-0.8
+0.5
-0.0
+1.0
stress
octanol 0.08 vol%
+0.4
-0.9
-0.2
+0.4
+0.9
control
PBS_cage_1_mouse_1_Cecum_40 hr
-0.1
+0.9
-0.7
-0.3
+1.0
phage
R2_N4_T1_phage10
-0.7
+1.0
+0.2
+0.9
-0.4
motility
outer cut, LB soft agar motility assay
-0.5
+0.5
+0.3
+1.3
+0.2
stress
LB Anaerobic with Ciprofloxacin Hydrochloride 0.0000000390625 mM
+0.3
+1.2
+0.3
+0.6
+0.2
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