Fitness for 5 genes in Escherichia coli BW25113

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500 ntrhlE and ybiA are separated by 231 nucleotidesybiA and dinG are separated by 119 nucleotidesdinG and ybiB are separated by 27 nucleotidesybiB and ybiC are separated by 140 nucleotides b0797: rhlE - RNA helicase (NCBI), at 830,095 to 831,459 rhlE b0798: ybiA - hypothetical protein (NCBI), at 831,691 to 832,173 ybiA b0799: dinG - ATP-dependent DNA helicase (NCBI), at 832,293 to 834,443 dinG b0800: ybiB - hypothetical protein (NCBI), at 834,471 to 835,433 ybiB b0801: ybiC - predicted dehydrogenase (NCBI), at 835,574 to 836,659 ybiC
Group Condition b0797 b0798 b0799 b0800 b0801
rhlE ybiA dinG ybiB ybiC
stress LB Anaerobic with Levofloxacin 0.0000000625 mM -0.2 -1.7 -3.1 -0.3 +0.1
msc 22hr_MSC_rep1_highinoculum +0.0 -4.0 -0.2 -0.6 -0.4
stress LB Anaerobic with Levofloxacin 0.0000000625 mM -0.2 -0.4 -3.8 -0.2 +0.0
carbon source carbon source D-Mannose 0.5mM -0.3 -2.3 -0.8 -0.4 -0.1
stress LB Anaerobic with Ciprofloxacin Hydrochloride 0.0000000390625 mM +0.2 -1.7 -1.9 -0.0 +0.2
stress Cisplatin 0.1 mg/ml +0.2 -1.3 -1.7 +0.1 -0.2
phage Ste41 -0.8 -0.9 -0.5 -0.0 -0.5
phage N4_phage 0.009375 MOI TC2 -0.4 -1.6 -0.2 -0.3 +0.1
stress LB Anaerobic with Ciprofloxacin Hydrochloride 0.00000001953125 mM +0.2 -1.0 -1.5 +0.0 +0.1
stress LB Anaerobic with Norfloxacin 0.0000000390625 mM +0.3 -0.8 -1.4 -0.0 +0.1
stress Cisplatin 0.05 mg/ml -0.3 -0.9 -0.8 +0.3 +0.2
carbon source carbon source D-Glucose 5mM +0.2 -1.9 -0.1 +0.0 +0.6
stress LB Anaerobic with Levofloxacin 0.00000003125 mM +0.3 +0.3 -1.8 -0.0 +0.1
control PBS_cage_1_mouse_1_Cecum_40 hr +0.6 -1.9 +0.4 -0.0 -0.1
stress LB Anaerobic with Ciprofloxacin Hydrochloride 0.00000001953125 mM +0.2 +0.6 -1.7 +0.1 -0.0
stress Ciprofloxacin Hydrochloride 0.0003 mM -0.7 -0.9 +1.1 -0.0 -0.1
stress LB Aerobic with Nitrofurantoin 0.00003125 mM -0.3 +1.7 -1.7 +0.2 -0.4
plasmid transformation mariner vector transformation; liquid outgrowth assay +1.0 -1.2 -0.1 +0.2 +0.6
phage T7_phage 0.0015625 MOI TC2 -0.1 +1.1 +0.3 +0.4 -0.9
stress LB Aerobic with Irgasan 0.0000003125 mM +0.9 +1.0 -0.2 -0.2 -0.2
stress Bacitracin 1 mg/ml +0.8 +0.9 -0.2 +0.7 -0.4
stress A22 0.04 mg/ml -0.1 +2.0 -0.1 -0.2 +0.3
plasmid transformation vcDART vector transformation; liquid outgrowth assay -0.2 +1.2 +0.1 +0.1 +0.9
stress LB Anaerobic with Benzethonium chloride 0.00003125 mM +1.0 +1.5 -0.1 +0.1 -0.5
stress Nalidixic 0.06 mM +0.3 +0.3 +1.7 +0.1 +0.0
stress Nalidixic 0.06 mM +0.4 +0.6 +1.4 +0.0 +0.0
stress LB Aerobic with Chlorhexidine diacetate salt 0.000000625 mM +0.2 +1.2 +0.3 +0.3 +0.5
stress Nalidixic 0.006 mg/ml +0.0 +0.0 +2.4 -0.0 +0.1
stress LB Aerobic with Novobiocin 0.0000625 mM +0.6 +1.5 +0.0 +0.5 +0.4
stress Benzalkonium Chloride 0.004 mg/ml +1.0 +1.4 -0.0 +0.9 +0.3
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