Fitness for 5 genes in Escherichia coli BW25113

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500 ntseqA and pgm are separated by 25 nucleotidespgm and ybfP are separated by 213 nucleotidesybfP and ybfG are separated by 40 nucleotidesybfG and ybfI are separated by 123 nucleotides b0687: seqA - regulatory protein for replication initiation (NCBI), at 712,210 to 712,755 seqA b0688: pgm - phosphoglucomutase (NCBI), at 712,781 to 714,421 pgm b0689: ybfP - hypothetical protein (NCBI), at 714,635 to 715,129 ybfP b0691: ybfG - orf, hypothetical protein (VIMSS), at 715,170 to 715,820 ybfG b4636: ybfI - no description, at 715,944 to 716,093 ybfI
Group Condition b0687 b0688 b0689 b0691 b4636
seqA pgm ybfP ybfG ybfI
phage Phage_N4_cage_3_mouse_1_Cecum_40 hr N.D. -6.8 -0.0 +0.2 -0.4
phage Phage_N4_cage_4_mouse_1_Cecum_40 hr N.D. -6.9 -0.2 +0.3 -0.1
control PBS_cage_2_mouse_1_Cecum_40 hr N.D. -6.2 +0.1 -0.1 -0.2
control PBS_cage_2_mouse_2_Cecum_40 hr N.D. -6.3 -0.2 -0.2 +0.3
phage Phage_N4_cage_4_mouse_2_Cecum_40 hr N.D. -5.9 -0.2 -0.1 -0.0
phage Phage_N4_cage_4_mice _Feces_40 hr N.D. -6.1 -0.1 +0.1 -0.0
micoeukaryotes Tetrahymena sp., Mixed culture-1 N.D. -4.5 +0.3 -0.4 -1.3
phage Phage_N4_cage_3_mouse_3_Cecum_40 hr N.D. -6.5 +0.3 +0.4 +0.1
control PBS_cage_1_mouse_2_Cecum_40 hr N.D. -6.6 +0.1 +0.3 +0.5
phage Phage_N4_cage_3_mouse_2_Cecum_40 hr N.D. -5.1 -0.0 -0.2 -0.2
phage Phage_N4_cage_4_mouse_3_Cecum_40 hr N.D. -5.3 -0.1 +0.1 -0.0
stress octanol 0.08 vol% N.D. -4.6 -0.5 -0.2 +0.0
phage T7_phage 0.000015625 MOI TC4 N.D. -5.1 -0.1 +0.0 -0.0
control PBS_cage_2_mice _Feces_40 hr N.D. -5.3 +0.1 +0.1 -0.1
control PBS_cage_2_mouse_3_Cecum_40 hr N.D. -4.9 -0.2 +0.1 -0.0
phage Phage_N4_cage_3_mice _Feces_40 hr N.D. -4.9 +0.1 +0.2 -0.4
stress decyl alcohol 5 vol% N.D. -4.8 -0.0 -0.1 -0.1
carbon source Ying_all64 rep A; time point 3 N.D. -4.7 -0.0 -0.0 -0.0
control PBS_cage_2_mice _Feces_22 hr N.D. -4.7 -0.0 -0.0 +0.0
motility outer cut, LB soft agar motility assay N.D. -4.5 -0.1 +0.1 -0.2
stress decyl alcohol 5 vol% N.D. -4.7 +0.2 -0.0 +0.0
mixed community Mixed culture; Bdellovibrio bacteriovorus str. Tiberius 1:10 starting OD to Ecoli; 0.1X M9; outgrowth in LBwithKan N.D. -4.6 +0.1 -0.1 +0.1
phage T7_phage 0.00015625 MOI TC2 N.D. -4.5 +0.1 +0.2 -0.1
control PBS_cage_1_mice _Feces_40 hr N.D. -4.9 -0.0 +0.1 +0.8
stress limonene 2.5 vol% N.D. -4.2 +0.1 -0.1 +0.4
control PBS_cage_1_mouse_1_Cecum_40 hr N.D. -3.9 +0.2 +0.0 +0.8
control PBS_cage_1_mice _Feces_22 hr N.D. -4.3 +0.3 +0.5 +0.9
stress LB Anaerobic with Amoxicillin 0.0000078125 mM N.D. +4.9 -0.3 -0.1 +0.0
phage Ste41 N.D. +5.6 -0.0 +0.5 -0.5
phage Ste41 N.D. +5.4 +0.1 +0.2 +0.4
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