Fitness for 5 genes in Escherichia coli BW25113

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500 ntglnS and ybfM are separated by 576 nucleotidesybfM and ybfN are separated by 49 nucleotidesybfN and fur are separated by 83 nucleotidesfur and uof overlap by 8 nucleotides b0680: glnS - glutaminyl-tRNA synthetase (NCBI), at 705,316 to 706,980 glnS b0681: ybfM - predicted outer membrane porin (NCBI), at 707,557 to 708,963 ybfM b0682: ybfN - predicted lipoprotein (NCBI), at 709,013 to 709,339 ybfN b0683: fur - ferric uptake regulator (NCBI), at 709,423 to 709,869 fur b4637: uof - ryhB-regulated fur leader peptide (RefSeq), at 709,862 to 709,948 uof
Group Condition b0680 b0681 b0682 b0683 b4637
glnS ybfM ybfN fur uof
control PBS_cage_2_mouse_2_Cecum_40 hr N.D. -0.5 -0.8 -6.1 N.D.
phage Phage_N4_cage_3_mouse_3_Cecum_40 hr N.D. +0.2 -0.6 -6.3 N.D.
control PBS_cage_1_mice _Feces_40 hr N.D. -0.1 -0.4 -6.1 N.D.
control PBS_cage_1_mice _Feces_16 hr N.D. -0.1 -0.4 -5.7 N.D.
phage Phage_N4_cage_3_mouse_4_Cecum_40 hr N.D. +0.1 +0.1 -6.4 N.D.
phage Phage_N4_cage_4_mouse_2_Cecum_40 hr N.D. +0.0 +0.4 -6.5 N.D.
control PBS_cage_2_mouse_3_Cecum_40 hr N.D. +0.5 -0.4 -6.1 N.D.
stress D-Cycloserine 0.1 mg/ml N.D. -0.0 -0.1 -5.8 N.D.
control PBS_cage_1_mouse_2_Cecum_40 hr N.D. +0.1 +0.5 -6.5 N.D.
stress octanol 0.08 vol% N.D. -0.2 -0.4 -5.3 N.D.
control PBS_cage_1_mice _Feces_22 hr N.D. +0.3 -0.1 -6.1 N.D.
motility outer cut, LB soft agar motility assay N.D. +0.1 -0.1 -5.9 N.D.
control PBS_cage_1_mouse_1_Cecum_40 hr N.D. +0.4 +0.0 -6.1 N.D.
protonated/deuterated deuterated glucose in D2O N.D. -0.1 -0.4 -4.9 N.D.
stress undecene 5 vol% N.D. -0.2 -0.3 -4.8 N.D.
stress limonene 2.5 vol% N.D. -0.3 -0.1 -4.9 N.D.
stress limonene 2.5 vol% N.D. -0.3 +0.2 -5.0 N.D.
stress 2,4-Dinitrophenol 2 mM N.D. +0.0 +0.1 -5.2 N.D.
stress undecene 2.5 vol% N.D. -0.2 +0.3 -5.0 N.D.
motility outer cut, LB soft agar motility assay N.D. +0.1 +0.7 -5.2 N.D.
phage Phage_N4_cage_4_mouse_1_Cecum_40 hr N.D. -0.2 +0.6 -4.5 N.D.
plasmid transformation vcDART vector transformation; agar assay N.D. +0.0 +0.1 +5.4 N.D.
plasmid transformation vcDART vector transformation; agar assay N.D. -0.3 -0.0 +5.9 N.D.
plasmid transformation vcDART vector transformation; liquid outgrowth assay N.D. +0.1 -0.5 +6.2 N.D.
stress Nickel (II) chloride 1.5 mM N.D. +0.1 -0.3 +6.3 N.D.
plasmid transformation mariner vector transformation; agar assay N.D. -0.1 +0.4 +6.2 N.D.
stress Nickel (II) chloride 1.5 mM N.D. +0.2 +0.3 +6.2 N.D.
stress Nickel (II) chloride 1.5 mM N.D. +0.1 +0.4 +6.5 N.D.
plasmid transformation vcDART vector transformation; liquid outgrowth assay N.D. +0.1 +0.3 +7.2 N.D.
plasmid transformation vcDART vector transformation; liquid outgrowth assay N.D. -0.2 +1.2 +7.4 N.D.
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