Fitness for 5 genes in Escherichia coli BW25113

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500 ntdsbG and ahpC are separated by 371 nucleotidesahpC and ahpF are separated by 244 nucleotidesahpF and uspG are separated by 120 nucleotidesuspG and ybdR are separated by 220 nucleotides b0604: dsbG - thiol:disulfide interchange protein (VIMSS), at 637,050 to 637,796 dsbG b0605: ahpC - alkyl hydroperoxide reductase, C22 subunit (NCBI), at 638,168 to 638,731 ahpC b0606: ahpF - alkyl hydroperoxide reductase, F52a subunit; detoxification of hydroperoxides (VIMSS), at 638,976 to 640,541 ahpF b0607: uspG - universal stress protein UP12 (NCBI), at 640,662 to 641,090 uspG b0608: ybdR - predicted oxidoreductase, Zn-dependent and NAD(P)-binding (NCBI), at 641,311 to 642,549 ybdR
Group Condition b0604 b0605 b0606 b0607 b0608
dsbG ahpC ahpF uspG ybdR
stress LB Aerobic with Chlorhexidine diacetate salt 0.000000625 mM -0.3 -4.0 -1.9 -0.4 +0.1
stress LB Aerobic with Chlorhexidine diacetate salt 0.000000625 mM -0.2 -3.9 -1.6 -0.4 -0.0
stress Cisplatin 0.1 mg/ml -0.2 -3.5 -2.2 +0.1 -0.2
stress LB Aerobic with Ramoplanin 0.000125 mM -0.2 -4.1 -0.8 -0.0 -0.0
stress LB Aerobic with Ramoplanin 0.000125 mM +0.2 -3.8 -1.3 +0.2 -0.3
control PBS_cage_2_mouse_1_Cecum_40 hr -1.2 -3.0 -0.7 -0.0 +0.3
motility outer cut, LB soft agar motility assay -0.1 -3.8 -0.2 -0.4 +0.4
stress undecene 2.5 vol% -0.0 -2.9 -0.8 -0.2 +0.2
stress LB Aerobic with Doxycycline hyclate 0.00000625 mM +0.1 -3.2 -0.1 -0.4 -0.0
stress undecene 5 vol% +0.0 -3.3 -0.7 +0.3 +0.1
stress undecene 5 vol% -0.1 -2.7 -0.8 +0.0 +0.0
motility outer cut, LB soft agar motility assay -0.1 -4.4 +0.2 +0.4 +0.4
carbon source D-Glucosamine Hydrochloride (C) +0.2 -2.2 -2.1 +0.7 -0.1
bacterial adhesion 1/10ON stiff -0.1 -2.4 -1.2 +0.1 +0.2
stress undecene 2.5 vol% -0.0 -2.9 -0.7 +0.2 +0.1
stress LB Aerobic with Zinc Pyrithione 0.0000025 mM +0.3 -3.6 +0.1 -0.2 +0.1
carbon source D-Glucosamine Hydrochloride (C) -0.0 -2.3 -1.3 +0.4 +0.0
stress LB Anaerobic with Cephalothin 0.0000078125 mM -0.1 -2.5 -0.5 -0.3 +0.1
stress LB Anaerobic with Cephalothin 0.0000078125 mM +0.2 -3.3 -0.2 +0.0 -0.1
stress LB Aerobic with Zinc Pyrithione 0.0000025 mM +0.2 -3.6 +0.4 +0.0 +0.1
phage Δdbn_10 +0.4 -2.9 -0.0 -0.1 -0.3
carbon source D-Galacturonic Acid (C) M9 +0.1 -1.7 -1.5 -0.0 +0.2
stress LB Aerobic with Novobiocin 0.0000625 mM +0.3 -2.7 -0.4 -0.1 +0.3
carbon source D-Ribose (C) +0.1 -1.8 -1.4 +0.5 -0.1
stress LB Aerobic with Spiramycin 0.000125 mM +0.2 -2.9 -0.3 +0.1 +0.4
predation 6 hr rep2_HD100_10fold_dilution_grewON +0.1 -3.3 +0.0 +0.4 +0.5
stress LB Aerobic with 2-Mercaptopyridine N-oxide 0.0000078125 mM +0.1 -3.2 +0.3 +0.2 +0.3
stress 2-nitrobenzenesulfonyl fluoride -0.3 +1.8 +2.0 +0.1 -0.1
stress LB Aerobic with Phenazine ethosulfate 0.0000625 mM +0.1 +3.4 +1.5 -0.1 +0.1
stress LB Aerobic with Phenazine ethosulfate 0.0000625 mM -0.1 +5.0 +1.2 -0.5 -0.0
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