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Fitness for 5 genes in
Escherichia coli BW25113
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500 nt
dsbG and ahpC are separated by 371 nucleotides
ahpC and ahpF are separated by 244 nucleotides
ahpF and uspG are separated by 120 nucleotides
uspG and ybdR are separated by 220 nucleotides
b0604: dsbG - thiol:disulfide interchange protein (VIMSS), at 637,050 to 637,796
dsbG
b0605: ahpC - alkyl hydroperoxide reductase, C22 subunit (NCBI), at 638,168 to 638,731
ahpC
b0606: ahpF - alkyl hydroperoxide reductase, F52a subunit; detoxification of hydroperoxides (VIMSS), at 638,976 to 640,541
ahpF
b0607: uspG - universal stress protein UP12 (NCBI), at 640,662 to 641,090
uspG
b0608: ybdR - predicted oxidoreductase, Zn-dependent and NAD(P)-binding (NCBI), at 641,311 to 642,549
ybdR
Group
Condition
b0604
b0605
b0606
b0607
b0608
dsbG
ahpC
ahpF
uspG
ybdR
stress
LB Aerobic with Chlorhexidine diacetate salt 0.000000625 mM
-0.3
-4.0
-1.9
-0.4
+0.1
stress
LB Aerobic with Chlorhexidine diacetate salt 0.000000625 mM
-0.2
-3.9
-1.6
-0.4
-0.0
stress
Cisplatin 0.1 mg/ml
-0.2
-3.5
-2.2
+0.1
-0.2
stress
LB Aerobic with Ramoplanin 0.000125 mM
-0.2
-4.1
-0.8
-0.0
-0.0
stress
LB Aerobic with Ramoplanin 0.000125 mM
+0.2
-3.8
-1.3
+0.2
-0.3
control
PBS_cage_2_mouse_1_Cecum_40 hr
-1.2
-3.0
-0.7
-0.0
+0.3
motility
outer cut, LB soft agar motility assay
-0.1
-3.8
-0.2
-0.4
+0.4
stress
undecene 2.5 vol%
-0.0
-2.9
-0.8
-0.2
+0.2
stress
LB Aerobic with Doxycycline hyclate 0.00000625 mM
+0.1
-3.2
-0.1
-0.4
-0.0
stress
undecene 5 vol%
+0.0
-3.3
-0.7
+0.3
+0.1
stress
undecene 5 vol%
-0.1
-2.7
-0.8
+0.0
+0.0
motility
outer cut, LB soft agar motility assay
-0.1
-4.4
+0.2
+0.4
+0.4
carbon source
D-Glucosamine Hydrochloride (C)
+0.2
-2.2
-2.1
+0.7
-0.1
bacterial adhesion
1/10ON stiff
-0.1
-2.4
-1.2
+0.1
+0.2
stress
undecene 2.5 vol%
-0.0
-2.9
-0.7
+0.2
+0.1
stress
LB Aerobic with Zinc Pyrithione 0.0000025 mM
+0.3
-3.6
+0.1
-0.2
+0.1
carbon source
D-Glucosamine Hydrochloride (C)
-0.0
-2.3
-1.3
+0.4
+0.0
stress
LB Anaerobic with Cephalothin 0.0000078125 mM
-0.1
-2.5
-0.5
-0.3
+0.1
stress
LB Anaerobic with Cephalothin 0.0000078125 mM
+0.2
-3.3
-0.2
+0.0
-0.1
stress
LB Aerobic with Zinc Pyrithione 0.0000025 mM
+0.2
-3.6
+0.4
+0.0
+0.1
phage
Δdbn_10
+0.4
-2.9
-0.0
-0.1
-0.3
carbon source
D-Galacturonic Acid (C) M9
+0.1
-1.7
-1.5
-0.0
+0.2
stress
LB Aerobic with Novobiocin 0.0000625 mM
+0.3
-2.7
-0.4
-0.1
+0.3
carbon source
D-Ribose (C)
+0.1
-1.8
-1.4
+0.5
-0.1
stress
LB Aerobic with Spiramycin 0.000125 mM
+0.2
-2.9
-0.3
+0.1
+0.4
predation
6 hr rep2_HD100_10fold_dilution_grewON
+0.1
-3.3
+0.0
+0.4
+0.5
stress
LB Aerobic with 2-Mercaptopyridine N-oxide 0.0000078125 mM
+0.1
-3.2
+0.3
+0.2
+0.3
stress
2-nitrobenzenesulfonyl fluoride
-0.3
+1.8
+2.0
+0.1
-0.1
stress
LB Aerobic with Phenazine ethosulfate 0.0000625 mM
+0.1
+3.4
+1.5
-0.1
+0.1
stress
LB Aerobic with Phenazine ethosulfate 0.0000625 mM
-0.1
+5.0
+1.2
-0.5
-0.0
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