Fitness for 5 genes in Escherichia coli BW25113

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500 ntybdM and ybdN overlap by 28 nucleotidesybdN and ybdO are separated by 146 nucleotidesybdO and dsbG are separated by 208 nucleotidesdsbG and ahpC are separated by 371 nucleotides b0601: ybdM - hypothetical protein (NCBI), at 633,970 to 634,599 ybdM b0602: ybdN - hypothetical protein (NCBI), at 634,572 to 635,792 ybdN b0603: ybdO - predicted DNA-binding transcriptional regulator (NCBI), at 635,939 to 636,841 ybdO b0604: dsbG - thiol:disulfide interchange protein (VIMSS), at 637,050 to 637,796 dsbG b0605: ahpC - alkyl hydroperoxide reductase, C22 subunit (NCBI), at 638,168 to 638,731 ahpC
Group Condition b0601 b0602 b0603 b0604 b0605
ybdM ybdN ybdO dsbG ahpC
motility outer cut, LB soft agar motility assay -0.3 +0.2 -3.1 -0.1 -3.8
stress Cisplatin 0.1 mg/ml -0.8 +0.3 -1.9 -0.2 -3.5
motility outer cut, LB soft agar motility assay -0.2 +0.5 -1.7 -0.1 -4.4
stress LB Aerobic with Ramoplanin 0.000125 mM -0.7 +0.1 +0.1 -0.2 -4.1
stress LB Aerobic with Chlorhexidine diacetate salt 0.000000625 mM -0.5 +0.3 -0.1 -0.3 -4.0
motility outer cut, LB soft agar motility assay -0.3 +0.1 -3.2 -0.0 -1.0
stress LB Aerobic with Ramoplanin 0.000125 mM -0.3 -0.2 -0.1 +0.2 -3.8
stress LB Aerobic with Chlorhexidine diacetate salt 0.000000625 mM +0.1 -0.2 +0.2 -0.2 -3.9
motility inner cut, LB soft agar motility assay +0.4 -0.2 -2.3 +0.2 -2.2
stress LB Aerobic with Zinc Pyrithione 0.0000025 mM -0.0 +0.0 -0.3 +0.3 -3.6
stress LB Aerobic with Zinc Pyrithione 0.0000025 mM -0.2 +0.0 +0.2 +0.2 -3.6
motility inner cut, LB soft agar motility assay -0.0 +0.1 -2.8 +0.3 -1.1
stress Aluminum chloride 5 mM +0.2 -0.1 -2.0 -0.5 -1.1
control PBS_cage_2_mouse_1_Cecum_40 hr -0.0 -0.2 +1.0 -1.2 -3.0
M9 Glucose 2% aerobic +0.1 +0.1 -2.9 -0.1 -0.6
motility inner cut, LB soft agar motility assay +0.2 -0.8 -2.1 +0.5 -0.9
stress Carbenicillin 0.008 mg/ml +0.0 +0.1 -1.4 +0.2 -2.2
stress Benzalkonium Chloride 0.004 mg/ml +0.1 +0.2 -2.7 +0.7 -1.5
stress LB Anaerobic with Chlorhexidine diacetate salt 0.000000625 mM -0.2 -0.3 -0.1 +0.4 -2.8
predation 6 hr rep2_HD100_10fold_dilution_grewON +0.2 +0.1 -0.0 +0.1 -3.3
stress LB Aerobic with Doxycycline hyclate 0.00000625 mM -0.0 +0.1 +0.4 +0.1 -3.2
stress LB Aerobic with 2-Mercaptopyridine N-oxide 0.0000078125 mM -0.1 +0.0 +0.7 +0.1 -3.2
stress LB Anaerobic with Cephalothin 0.0000078125 mM +0.2 +0.4 +0.2 +0.2 -3.3
control PBS_cage_1_mouse_1_Cecum_40 hr -0.2 +0.7 +1.1 -0.5 -2.4
phage RB68 +0.2 +0.2 +1.0 -0.5 -2.2
phage Δdbn_10 -0.2 -0.0 +1.4 +0.4 -2.9
carbon source Glycolic Acid (C) -0.3 +0.2 -1.8 +0.1 +1.6
phage Papa dilution 10-1 cacl2 maltose -0.3 -0.4 +3.2 -0.3 -0.4
stress LB Aerobic with Phenazine ethosulfate 0.0000625 mM -0.0 +0.1 +0.6 +0.1 +3.4
stress LB Aerobic with Phenazine ethosulfate 0.0000625 mM -0.3 -0.3 +1.3 -0.1 +5.0
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