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Fitness for 5 genes in
Escherichia coli BW25113
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500 nt
ylcG and ybcQ are separated by 85 nucleotides
ybcQ and nmpC are separated by 189 nucleotides
nmpC and insH-2 are separated by 150 nucleotides
insH-2 and essD are separated by 1644 nucleotides
b4509: ylcG - DLP12 prophage; predicted protein (NCBI), at 572,953 to 573,093
ylcG
b0551: ybcQ - DLP12 prophage; predicted antitermination protein (NCBI), at 573,179 to 573,562
ybcQ
b0553: nmpC - DLP12 prophage; truncated outer membrane porin (pseudogene) (RefSeq), at 573,752 to 573,809
nmpC
b0552: insH-2 - DLP12 prophage; IS5 transposase and trans-activator (NCBI), at 573,960 to 574,976
insH-2
b0554: essD - DLP12 prophage; predicted phage lysis protein (NCBI), at 576,621 to 576,836
essD
Group
Condition
b4509
b0551
b0553
b0552
b0554
ylcG
ybcQ
nmpC
insH-2
essD
stress
LB Aerobic with Ramoplanin 0.000125 mM
-4.4
-0.0
-1.1
N.D.
+0.2
stress
LB Aerobic with Ramoplanin 0.000125 mM
-4.4
-0.0
-0.8
N.D.
+0.0
stress
LB Aerobic with Spiramycin 0.0000625 mM
-4.5
-0.1
+0.2
N.D.
+0.1
stress
LB Anaerobic with Benzethonium chloride 0.000015625 mM
-3.8
-0.1
-0.1
N.D.
-0.2
retron_ec_48_control
retron_Ec_48_control
-2.9
-0.1
-0.2
N.D.
-0.7
gfp_control
GFP_control
-2.4
-0.3
-0.1
N.D.
-0.6
stress
LB Anaerobic with Spiramycin 0.00003125 mM
-3.9
+0.1
+0.1
N.D.
+0.3
stress
LB Anaerobic with Benzethonium chloride 0.00003125 mM
-3.6
+0.4
-0.7
N.D.
+0.8
stress
LB Anaerobic with Spiramycin 0.000125 mM
-3.7
+0.2
+0.2
N.D.
+0.2
stress
LB Anaerobic with Ramoplanin 0.0000625 mM
-3.4
+0.1
+0.2
N.D.
+0.1
gfp_control
GFP_control
-1.8
-0.2
-0.5
N.D.
-0.4
drt_type_3
DRT_type_3
-1.6
-0.2
-0.4
N.D.
-0.8
stress
LB Anaerobic with Novobiocin 0.00003125 mM
-2.9
+0.1
+0.0
N.D.
-0.2
stress
LB Anaerobic with Ticarcillin 0.00003125 mM
-3.0
+0.2
-0.0
N.D.
+0.0
stress
LB Anaerobic with Vancomycin Hydrochloride from Streptomyces orientalis 0.00003125 mM
-3.3
+0.3
-0.2
N.D.
+0.5
mzaabcde
mzaABCDE
-1.8
-0.2
-0.3
N.D.
-0.4
stress
LB Anaerobic with Novobiocin 0.000125 mM
-2.5
+0.0
-0.1
N.D.
-0.2
stress
LB Anaerobic with Novobiocin 0.000125 mM
-2.5
-0.0
+0.0
N.D.
-0.1
stress
LB Aerobic with Spiramycin 0.000125 mM
-3.2
+0.1
+0.2
N.D.
+0.1
ppi
ppI
-1.5
-0.1
-0.3
N.D.
-0.7
phage
Papa dilution 10-1 cacl2 maltose
-0.5
-0.5
-0.6
N.D.
-1.0
stress
LB Anaerobic with Irgasan 0.000000625 mM
-2.3
+0.0
+0.0
N.D.
-0.2
stress
LB Anaerobic with Doxycycline hyclate 0.000000390625 mM
-2.7
+0.0
+0.1
N.D.
+0.1
stress
Benzalkonium Chloride 0.004 mg/ml
-2.5
+0.2
+0.4
N.D.
-0.4
stress
LB Anaerobic with Chloramphenicol 0.00000390625 mM
-2.3
+0.0
+0.1
N.D.
-0.0
stress
LB Anaerobic with Vancomycin Hydrochloride from Streptomyces orientalis 0.00003125 mM
-2.8
+0.2
-0.1
N.D.
+0.5
supernatant
LB 0.5x with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x
-2.2
+0.1
-0.1
N.D.
+0.0
stress
LB Anaerobic with Spiramycin 0.00003125 mM
-2.3
+0.1
+0.2
N.D.
+0.0
stress
LB Anaerobic with Cephalothin 0.0000078125 mM
+4.0
-0.0
-0.5
N.D.
-0.5
stress
LB Anaerobic with Cephalothin 0.0000078125 mM
+4.1
+0.1
-0.1
N.D.
-0.6
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