Fitness for 5 genes in Escherichia coli BW25113

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500 ntsfmD and sfmH are separated by 35 nucleotidessfmH and sfmF are separated by 10 nucleotidessfmF and fimZ are separated by 2 nucleotidesfimZ and argU are separated by 242 nucleotides b0532: sfmD - predicted outer membrane export usher protein (NCBI), at 558,920 to 561,523 sfmD b0533: sfmH - predicted fimbrial-like adhesin protein (RefSeq), at 561,559 to 562,542 sfmH b0534: sfmF - predicted fimbrial-like adhesin protein (NCBI), at 562,553 to 563,068 sfmF b0535: fimZ - predicted DNA-binding transcriptional regulator (NCBI), at 563,071 to 563,703 fimZ b0536: argU - tRNA-Arg (NCBI), at 563,946 to 564,022 argU
Group Condition b0532 b0533 b0534 b0535 b0536
sfmD sfmH sfmF fimZ argU
carbon source carbon source D-Mannose 5mM -0.4 -1.1 +0.1 -1.3 N.D.
stress LB Anaerobic with Chlorhexidine diacetate salt 0.000000625 mM -0.3 -0.8 +0.2 -1.7 N.D.
stress LB Anaerobic with Benzethonium chloride 0.000015625 mM -0.2 -0.7 -0.1 -1.5 N.D.
predation 3 hr rep1_Tiberius_100fold_dilution -0.5 -1.0 -0.3 -0.7 N.D.
carbon source carbon source D-Mannose 0.5mM -0.2 -1.7 -0.1 -0.4 N.D.
predation 3 hr rep1_Tiberius_10fold_dilution -0.3 -0.8 -0.2 -1.0 N.D.
stress LB Anaerobic with Spectinomycin 0.0000625 mM -0.2 -0.8 -0.2 -1.1 N.D.
stress LB Aerobic with Nitrofurantoin 0.00003125 mM -0.2 -0.5 -0.1 -1.3 N.D.
stress LB Anaerobic with Nalidixic 0.0000078125 mM -0.0 -0.8 -0.2 -1.1 N.D.
M9 Acetate 0.5% aerobic -0.5 -0.8 +0.0 -1.0 N.D.
stress LB Anaerobic with Nitrofurantoin 0.000015625 mM -0.2 -0.7 -0.1 -1.1 N.D.
stress LB Anaerobic with Nitrofurantoin 0.00003125 mM +0.1 -0.6 -0.6 -1.0 N.D.
M9 Glucose 2% aerobic -0.4 -0.6 -0.2 -0.9 N.D.
stress LB Aerobic with Chlorhexidine diacetate salt 0.000000625 mM +0.0 -0.7 -0.1 -1.2 N.D.
predation 3 hr rep1_HD100_100fold_dilution -0.4 -0.7 -0.3 -0.8 N.D.
stress LB Anaerobic with Furaltadone 0.00000390625 mM -0.1 -0.2 -0.2 -1.5 N.D.
predation 3 hr rep1_Tiberius_no_dilution -0.4 -0.5 -0.3 -0.7 N.D.
M9 Glucose 2%, 20 mM NO3- anaerobic -0.5 -0.5 -0.1 -0.8 N.D.
stress LB Anaerobic with 8-hydroxy-nitroquinoline 0.0000025 mM -0.1 -0.5 +0.0 -1.3 N.D.
phage Δdbn_10 +0.3 -1.4 +0.2 -1.1 N.D.
M9 Glucose 2% anaerobic -0.5 -0.6 -0.1 -0.7 N.D.
nopredatorcontrol 3 hr NoPredatorControl -0.4 -0.2 -0.2 -1.1 N.D.
M9 Acetate 0.5% aerobic -0.4 -0.7 -0.1 -0.6 N.D.
predation 3 hr rep1_HD100_no_dilution -0.3 -0.5 +0.1 -1.2 N.D.
stress LB Aerobic with Ramoplanin 0.000125 mM -0.3 -1.0 -0.1 -0.4 N.D.
drt_type_3 DRT_type_3 -0.0 -0.1 -0.4 -1.3 N.D.
gfp_control GFP_control -0.1 -0.4 -0.1 -1.2 N.D.
retron_ec_48_control retron_Ec_48_control -0.3 -0.3 -0.3 -0.8 N.D.
micoeukaryotes Tetrahymena sp., Mixed culture-1 -0.3 -0.7 +0.8 -0.3 N.D.
nophagecontrol R1_N4_T1_phage0 -0.0 -1.0 -0.2 +1.1 N.D.
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