Fitness for 5 genes in Escherichia coli BW25113

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500 ntallR and gcl are separated by 89 nucleotidesgcl and hyi are separated by 12 nucleotideshyi and glxR are separated by 99 nucleotidesglxR and ybbW are separated by 168 nucleotides b0506: allR - DNA-binding transcriptional repressor (NCBI), at 532,235 to 533,050 allR b0507: gcl - glyoxylate carboligase (NCBI), at 533,140 to 534,921 gcl b0508: hyi - hydroxypyruvate isomerase (NCBI), at 534,934 to 535,710 hyi b0509: glxR - tartronate semialdehyde reductase, NADH-dependent (NCBI), at 535,810 to 536,688 glxR b0511: ybbW - putative transport protein (VIMSS), at 536,857 to 538,311 ybbW
Group Condition b0506 b0507 b0508 b0509 b0511
allR gcl hyi glxR ybbW
carbon source Glycolic Acid (C) +3.1 -3.7 -4.7 -1.4 -0.1
carbon source Glycolic Acid (C) +2.6 -3.7 -4.1 -1.2 +0.0
stress LB Anaerobic with Phenazine ethosulfate 0.000125 mM -0.5 -0.2 -0.8 -0.4 -0.5
M9 Acetate 0.5% aerobic -0.3 +0.1 -1.1 -0.5 -0.6
predation 6 hr rep1_HD100_10fold_dilution_grewON -0.9 -0.5 +0.8 +0.0 -0.9
stress octanol 0.08 vol% -1.5 -0.3 +0.4 +0.3 +0.1
phage Ste41 -0.9 -0.5 +0.8 -0.1 -0.2
motility inner cut, LB soft agar motility assay -0.2 +0.6 -1.0 +0.2 -0.3
phage Phage_N4_cage_3_mouse_4_Cecum_40 hr +2.5 +0.0 -1.3 -0.7 -0.7
phage T7_phage 0.00015625 MOI TC4 -0.5 -0.4 +0.6 +0.7 +0.3
phage Phage_N4_cage_4_mouse_3_Cecum_40 hr +2.2 -0.4 +0.1 -0.1 -0.0
phage Phage_N4_cage_4_mice _Feces_40 hr +2.5 -0.5 +0.0 -0.0 -0.2
phage Phage_N4_cage_4_mice _Feces_16 hr +1.5 -0.4 +0.6 +0.2 -0.1
phage Phage_N4_cage_3_mouse_2_Cecum_40 hr +2.6 -0.3 +0.0 -0.3 +0.1
phage Phage_N4_cage_3_mice _Feces_22 hr +2.2 -0.1 +0.4 -0.2 +0.1
phage Phage_N4_cage_4_mice _Feces_22 hr +2.5 -0.3 +0.1 -0.0 +0.1
control PBS_cage_1_mice _Feces_22 hr +2.2 +0.3 +0.1 -0.0 -0.1
control PBS_cage_2_mouse_3_Cecum_40 hr +2.9 -0.3 +0.4 -0.4 -0.1
phage Phage_N4_cage_3_mice _Feces_40 hr +3.2 -0.2 -0.0 -0.5 -0.1
control PBS_cage_1_mice _Feces_40 hr +3.1 -0.0 +0.1 -0.3 -0.1
phage Phage_N4_cage_4_mouse_2_Cecum_40 hr +3.1 -0.8 -0.1 +0.3 +0.2
phage Phage_N4_cage_3_mouse_1_Cecum_40 hr +2.7 -0.2 +0.8 -0.1 +0.0
control PBS_cage_2_mice _Feces_22 hr +2.9 -0.2 +0.7 -0.2 +0.1
phage Phage_N4_cage_4_mouse_1_Cecum_40 hr +3.2 -0.4 +0.5 -0.0 +0.1
control PBS_cage_2_mice _Feces_40 hr +3.2 -0.3 +0.6 -0.1 +0.2
control PBS_cage_1_mouse_2_Cecum_40 hr +2.9 +0.1 +0.5 +0.3 -0.0
phage Phage_N4_cage_3_mouse_3_Cecum_40 hr +2.6 -0.1 +0.8 +0.2 +0.3
control PBS_cage_2_mouse_2_Cecum_40 hr +3.2 -0.1 +0.7 -0.2 +0.3
control PBS_cage_1_mouse_1_Cecum_40 hr +2.8 -0.0 +1.3 +0.2 -0.2
control PBS_cage_2_mouse_1_Cecum_40 hr +3.6 -0.2 +1.3 -0.1 -0.0
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