Fitness for 5 genes in Escherichia coli BW25113

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500 ntcyoD and cyoC overlap by 1 nucleotidescyoC and cyoB overlap by 11 nucleotidescyoB and cyoA are separated by 21 nucleotidescyoA and ampG are separated by 459 nucleotides b0429: cyoD - cytochrome o ubiquinol oxidase subunit IV (NCBI), at 446,941 to 447,270 cyoD b0430: cyoC - cytochrome o ubiquinol oxidase subunit III (NCBI), at 447,270 to 447,884 cyoC b0431: cyoB - cytochrome o ubiquinol oxidase subunit I (NCBI), at 447,874 to 449,865 cyoB b0432: cyoA - cytochrome o ubiquinol oxidase subunit II (NCBI), at 449,887 to 450,834 cyoA b0433: ampG - muropeptide transporter (NCBI), at 451,294 to 452,769 ampG
Group Condition b0429 b0430 b0431 b0432 b0433
cyoD cyoC cyoB cyoA ampG
stress 2,4-Dinitrophenol 2 mM -6.9 -4.9 -4.9 -4.0 -0.3
stress undecene 5 vol% -4.9 -4.5 -5.1 -4.7 +0.1
stress undecene 5 vol% -4.3 -4.5 -5.0 -4.6 +0.1
stress 2,4-Dinitrophenol 2 mM -3.9 -4.2 -4.2 -3.7 -0.3
stress hexanol 0.31 vol% -2.9 -4.2 -3.8 -2.8 +0.3
stress 3-methyl-2-butenol 1.25 vol% -2.6 -4.3 -3.3 -3.1 +0.0
stress 3-methyl-2-butenol 1.25 vol% -2.4 -3.4 -3.7 -2.6 -0.1
carbon source Glycolic Acid (C) -2.3 -3.5 -2.8 -2.7 +0.1
stress Vanillin 5 mM -2.8 -2.8 -2.9 -2.4 -0.1
stress ethyl acetate 5 vol% -2.9 -3.4 -2.6 -2.2 +0.0
carbon source succinate (C) -2.7 -3.2 -2.5 -3.0 +0.4
stress undecene 2.5 vol% -3.0 -2.5 -2.6 -2.7 +0.2
carbon source Glycolic Acid (C) -2.4 -2.5 -2.7 -2.9 +0.4
carbon source succinate (C) -2.2 -2.4 -2.9 -2.8 +0.4
stress LB Aerobic with Chlorhexidine diacetate salt 0.000000625 mM +2.4 +2.3 +2.5 +3.0 +0.3
stress LB Aerobic with Chlorhexidine diacetate salt 0.000000625 mM +2.3 +2.3 +2.7 +3.2 +0.1
plasmid transformation mariner vector transformation; liquid outgrowth assay +3.2 +2.8 +2.5 +3.2 -0.1
plasmid transformation vcDART vector transformation; agar assay +3.1 +3.4 +2.9 +3.2 +0.1
plasmid transformation mariner vector transformation; agar assay +3.4 +3.4 +2.8 +3.4 +0.0
plasmid transformation mariner vector transformation; agar assay +3.4 +3.5 +2.9 +3.4 -0.0
plasmid transformation mariner vector transformation; agar assay +3.5 +3.7 +3.0 +3.3 +0.0
plasmid transformation vcDART vector transformation; agar assay +3.5 +3.6 +3.1 +3.4 +0.1
plasmid transformation mariner vector transformation; liquid outgrowth assay +4.1 +3.5 +3.8 +4.4 -0.4
plasmid transformation vcDART vector transformation; agar assay +4.0 +4.1 +3.5 +4.0 +0.1
stress Cisplatin 0.1 mg/ml +4.2 +3.7 +3.4 +4.3 +0.0
plasmid transformation mariner vector transformation; liquid outgrowth assay +4.0 +3.6 +4.0 +4.3 -0.1
stress Spectinomycin 0.0125 mg/ml +4.0 +3.8 +3.9 +4.3 +0.1
plasmid transformation vcDART vector transformation; liquid outgrowth assay +4.8 +4.1 +4.2 +4.9 -0.1
plasmid transformation vcDART vector transformation; liquid outgrowth assay +5.4 +4.8 +4.9 +5.5 -0.0
plasmid transformation vcDART vector transformation; liquid outgrowth assay +7.0 +6.5 +6.1 +7.1 -0.1
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