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Protein
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Fitness for 5 genes in
Escherichia coli BW25113
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500 nt
yaiE and ykiA are separated by 147 nucleotides
ykiA and rdgC are separated by 157 nucleotides
rdgC and yajF are separated by 124 nucleotides
yajF and araJ are separated by 244 nucleotides
b0391: yaiE - hypothetical protein (NCBI), at 407,401 to 407,685
yaiE
b0392: ykiA - hypothetical protein (NCBI), at 407,833 to 408,174
ykiA
b0393: rdgC - recombination associated protein (NCBI), at 408,332 to 409,243
rdgC
b0394: yajF - possible NAGC-like transcriptional regulator (VIMSS), at 409,368 to 410,276
yajF
b0396: araJ - involved in either transport or processing of arabinose polymers (VIMSS), at 410,521 to 411,705
araJ
Group
Condition
b0391
b0392
b0393
b0394
b0396
yaiE
ykiA
rdgC
yajF
araJ
phage
Lambda_ci1857
-0.6
-0.0
-4.1
+0.0
-0.2
motility
outer cut, LB soft agar motility assay
-0.5
-0.1
-0.9
-0.4
-0.3
stress
Bacitracin 1 mg/ml
+0.0
+0.0
-1.5
+0.2
-0.1
phage
Ste41
-0.7
-0.4
+0.6
-0.4
-0.1
plasmid transformation
mariner vector transformation; liquid outgrowth assay
-0.0
-0.6
+1.1
-0.6
-0.1
nophagecontrol
R1_N4_T1_phage0
-0.2
+0.4
+0.3
-0.6
-0.0
phage
RB68
-0.4
-0.5
+0.6
+0.0
+0.2
phage
Phage_N4_cage_3_mouse_4_Cecum_40 hr
+0.6
-0.5
-0.4
+0.1
+0.1
phage
Δdbn_10
-0.5
-0.2
+0.5
+0.3
-0.1
stress
LB Aerobic with Chlorhexidine diacetate salt 0.000000625 mM
-0.2
-0.3
+0.6
-0.2
+0.3
plasmid transformation
mariner vector transformation; liquid outgrowth assay
-0.0
-0.3
+1.3
-0.5
-0.2
stress
LB Anaerobic with Furaltadone 0.000015625 mM
-0.3
+0.3
+0.9
-0.3
-0.1
phage
Phage_N4_cage_3_mouse_3_Cecum_40 hr
+0.4
+0.2
-0.5
+0.0
+0.4
plasmid transformation
mariner vector transformation; liquid outgrowth assay
+0.0
-0.3
+1.3
-0.4
-0.2
plasmid transformation
vcDART vector transformation; liquid outgrowth assay
+0.4
-0.7
+1.2
+0.3
-0.3
stress
LB Anaerobic with Cefoxitin 0.000003125 mM
+0.2
+0.1
+1.1
-0.3
-0.1
stress
LB Anaerobic with Amoxicillin 0.0000078125 mM
+0.2
-0.1
+1.3
-0.2
+0.0
plasmid transformation
vcDART vector transformation; liquid outgrowth assay
+0.1
-0.3
+1.7
-0.0
-0.2
plasmid transformation
vcDART vector transformation; liquid outgrowth assay
+0.4
+0.0
+0.9
-0.2
+0.3
stress
Carbenicillin 0.008 mg/ml
-0.1
+0.2
+1.3
+0.0
+0.0
stress
1-ethyl-3-methylimidazolium chloride 40 mM
+0.1
+0.1
+1.0
+0.4
-0.0
stress
LB Anaerobic with Amoxicillin 0.0000078125 mM
+0.1
-0.0
+1.5
+0.3
-0.2
stress
LB Aerobic with Irgasan 0.0000003125 mM
+0.0
+0.1
+1.3
+0.2
+0.1
stress
LB Aerobic with 2-Mercaptopyridine N-oxide 0.0000078125 mM
+0.1
-0.0
+1.4
+0.1
+0.2
stress
LB Aerobic with 2-Mercaptopyridine N-oxide 0.0000078125 mM
+0.2
+0.0
+1.6
-0.1
+0.1
stress
Cephalothin 0.01 mg/ml
-0.4
+0.0
+2.3
-0.0
+0.0
stress
LB Anaerobic with Cephalothin 0.0000078125 mM
-0.3
+0.1
+2.9
-0.7
-0.0
stress
LB Anaerobic with Cephalothin 0.0000078125 mM
+0.1
-0.0
+2.6
-0.3
-0.2
stress
LB Aerobic with Zinc Pyrithione 0.0000025 mM
+0.3
+0.0
+1.9
-0.1
+0.1
stress
LB Aerobic with Zinc Pyrithione 0.0000025 mM
+0.3
+0.2
+1.8
+0.0
+0.2
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