Fitness for 5 genes in Escherichia coli BW25113

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500 ntaroL and yaiA are separated by 49 nucleotidesyaiA and aroM are separated by 257 nucleotidesaroM and yaiE are separated by 71 nucleotidesyaiE and ykiA are separated by 147 nucleotides b0388: aroL - shikimate kinase II (NCBI), at 405,629 to 406,153 aroL b0389: yaiA - hypothetical protein (NCBI), at 406,203 to 406,394 yaiA b0390: aroM - hypothetical protein (NCBI), at 406,652 to 407,329 aroM b0391: yaiE - hypothetical protein (NCBI), at 407,401 to 407,685 yaiE b0392: ykiA - hypothetical protein (NCBI), at 407,833 to 408,174 ykiA
Group Condition b0388 b0389 b0390 b0391 b0392
aroL yaiA aroM yaiE ykiA
carbon source acetate (C) +1.1 -2.0 -4.4 -0.3 +0.4
stress LB Anaerobic with Nitrofurantoin 0.00003125 mM -1.6 -2.5 -0.2 -0.2 -0.2
carbon source L-Malic (C) +0.2 -1.3 -3.5 -0.2 +0.3
carbon source Glycolic Acid (C) -0.3 -0.9 -3.3 +0.0 +0.2
carbon source acetate (C) +1.3 -1.2 -3.8 -0.3 +0.3
carbon source a-Ketoglutaric (C) +0.7 -0.4 -3.9 -0.4 +0.4
carbon source Glycolic Acid (C) +0.1 -0.6 -3.0 -0.1 +0.1
carbon source carbon source D-Glucose 0.25mM -2.8 -0.5 -0.7 +0.5 +0.0
stress LB Anaerobic with Benzethonium chloride 0.00003125 mM -0.8 -2.2 -0.2 -0.3 -0.0
carbon source a-Ketoglutaric (C) +0.9 -0.5 -4.0 -0.1 +0.4
carbon source succinate (C) +0.0 -0.2 -3.3 -0.1 +0.4
predation 6 hr rep2_HD100_10fold_dilution_grewON -0.6 -2.1 +0.2 -0.5 -0.0
carbon source Ying_sugar7 rep C; time point 3 -2.2 -0.5 -0.2 -0.2 +0.1
carbon source carbon source D-Mannose 5mM -0.7 -2.2 -0.4 +0.0 +0.3
carbon source D-Lactate (C) +0.4 -0.9 -2.1 -0.4 +0.1
phage R2_N4_T2_phage10 +0.1 -2.0 -0.3 -0.2 -0.3
carbon source L-Malic (C) +0.5 -0.2 -3.3 -0.0 +0.3
carbon source Ying_sugar7 rep B; time point 3 -2.3 +0.0 -0.3 -0.2 +0.2
carbon source Ying_sugar7 rep A; time point 3 -1.9 -0.2 -0.5 -0.1 +0.2
carbon source succinate (C) +0.5 -0.2 -3.1 +0.0 +0.3
stress LB Anaerobic with Chlorhexidine diacetate salt 0.000000625 mM -1.1 -1.6 +0.2 +0.1 +0.1
carbon source Acetate (C) +1.5 -0.3 -3.2 +0.1 +0.5
carbon source Acetate (C) +1.4 -0.5 -2.9 +0.1 +0.6
carbon source D-Ribose (C) +1.2 -0.6 -1.7 -0.1 +0.2
carbon source D-Ribose (C) +0.9 -0.2 -1.8 -0.0 +0.3
phage T7_phage 0.0015625 MOI TC2 -1.5 +1.0 +0.1 -0.3 +0.2
carbon source LMW_DNA_from_Lysinibacillus_FW301-JW8 7.7 ppm (C) +1.2 -0.8 -0.7 -0.1 +0.4
phage T7_phage 0.00015625 MOI TC4 -1.2 +1.8 +0.3 +0.1 -0.1
lb LB +1.5 +0.8 -0.7 -0.1 -0.0
lb LB +1.3 +1.0 -0.5 +0.1 +0.1
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