Fitness for 5 genes in Escherichia coli BW25113

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500 ntyagY and yagZ are separated by 57 nucleotidesyagZ and ykgK are separated by 74 nucleotidesykgK and ykgL are separated by 775 nucleotidesykgL and ykgO are separated by 34 nucleotides b0292: yagY - hypothetical protein (NCBI), at 308,582 to 309,250 yagY b0293: yagZ - hypothetical protein (NCBI), at 309,308 to 309,895 yagZ b0294: ykgK - predicted regulator (NCBI), at 309,970 to 310,560 ykgK b0295: ykgL - hypothetical protein (NCBI), at 311,336 to 311,563 ykgL b4506: ykgO - rpmJ (L36) paralog (NCBI), at 311,598 to 311,738 ykgO
Group Condition b0292 b0293 b0294 b0295 b4506
yagY yagZ ykgK ykgL ykgO
micoeukaryotes Tetrahymena sp., Mixed culture-1 -0.8 -0.2 -0.9 -0.1 -1.2
stress Benzalkonium Chloride 0.004 mg/ml -0.7 -0.0 -0.8 +0.1 -1.2
motility inner cut, LB soft agar motility assay +0.0 -0.1 -0.9 -1.1 -0.4
phage Ste41 +0.1 -0.8 -0.4 -0.7 +0.4
phage NpK -0.6 +0.2 -0.7 -0.6 +0.4
phage Phage_N4_cage_3_mouse_3_Cecum_40 hr +0.2 -0.1 +0.5 -0.4 -1.3
carbon source carbon source D-Mannose 5mM -0.1 -0.4 -0.2 +0.8 -1.1
phage Mnm2 +0.1 -0.5 -0.2 -1.0 +0.5
phage Mnm2 -0.9 +0.2 +0.2 -0.7 +0.4
mixed community control; abiotic network mixed community control; abiotic network -0.4 -0.4 +0.6 +0.2 -0.8
stress Ciprofloxacin Hydrochloride 0.000156 mM -0.2 -0.2 +0.8 -0.5 -0.6
phage T7_phage 0.00015625 MOI TC4 -0.8 +0.0 +0.4 -0.8 +0.6
carbon source carbon source D-Glucose 20mM +0.5 +0.2 +0.3 -0.3 -1.0
motility outer cut, LB soft agar motility assay +0.3 +0.6 -0.5 +0.4 -0.8
stress LB Aerobic with Nitrofurantoin 0.00003125 mM +0.1 -0.2 -0.5 -0.7 +1.4
phage R2_N4_T1_phage10 -0.1 -0.3 -0.7 +0.4 +1.0
no phage control CTR -0.4 +0.4 +1.0 -0.4 -0.3
control PBS_cage_1_mouse_1_Cecum_40 hr -0.6 +0.3 -0.3 +0.7 +0.8
phage R2_N4_T2_phage10 -0.6 -0.2 +0.4 +0.5 +1.0
phage Δdbn_10 +0.5 -0.4 +1.0 -0.1 +0.4
phage T7_phage 0.00015625 MOI TC3 -0.4 -0.2 +1.0 +0.6 +0.6
no phage control CTR -0.4 -0.1 +0.6 +0.7 +0.8
stress Ciprofloxacin Hydrochloride 0.0024 mM +0.2 -0.3 +0.8 +0.7 +0.2
phage Ste41 -1.2 +0.1 +0.9 +1.0 +1.0
control PBS_cage_1_mice _Feces_16 hr -0.2 +0.7 +0.1 +0.9 +0.5
phage RB68 -0.1 +0.3 +0.6 +0.8 +0.6
phage N4_phage 0.009375 MOI TC2 +0.2 -0.0 +0.4 +0.5 +1.4
no phage control CTR +0.1 +0.1 +0.7 -0.2 +1.9
phage RB68 +0.0 +0.5 +0.8 +1.1 +0.6
phage RB51m1 -0.0 +0.9 +0.9 +0.1 +1.6
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