Fitness for 5 genes in Escherichia coli BW25113

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500 ntyafH and lpcA are separated by 239 nucleotideslpcA and yafJ are separated by 205 nucleotidesyafJ and yafK overlap by 30 nucleotidesyafK and yafQ are separated by 155 nucleotides b0221: yafH - putative acyl-CoA dehydrogenase (EC 1.3.99.-) (VIMSS), at 240,859 to 243,303 yafH b0222: lpcA - phosphoheptose isomerase (NCBI), at 243,543 to 244,121 lpcA b0223: yafJ - predicted amidotransfease (NCBI), at 244,327 to 245,094 yafJ b0224: yafK - hypothetical protein (NCBI), at 245,065 to 245,805 yafK b0225: yafQ - predicted toxin of the YafQ-DinJ toxin-antitoxin system (NCBI), at 245,961 to 246,239 yafQ
Group Condition b0221 b0222 b0223 b0224 b0225
yafH lpcA yafJ yafK yafQ
control PBS_cage_1_mouse_1_Cecum_40 hr -0.1 -6.8 -0.2 -0.4 -1.3
phage Phage_N4_cage_3_mouse_4_Cecum_40 hr +0.1 -7.2 -0.2 -0.2 -1.0
control PBS_cage_1_mice _Feces_22 hr +0.1 -6.9 -0.2 -0.5 -0.9
phage Phage_N4_cage_3_mice _Feces_40 hr +0.0 -7.6 -0.1 -0.2 -0.2
carbon source Ying_sugar7 rep C; time point 3 -0.1 -6.3 -0.9 -0.3 -0.3
control PBS_cage_2_mice _Feces_40 hr +0.0 -7.1 +0.0 +0.1 -0.9
phage Phage_N4_cage_3_mice _Feces_16 hr -0.1 -7.6 -0.2 -0.0 -0.0
phage Phage_N4_cage_3_mice _Feces_22 hr -0.0 -7.6 -0.2 -0.0 +0.1
control PBS_cage_2_mice _Feces_16 hr +0.1 -7.4 +0.1 -0.1 -0.4
phage Phage_N4_cage_4_mice _Feces_40 hr +0.1 -7.6 -0.1 -0.1 +0.0
carbon source Ying_sugar7 rep B; time point 3 -0.0 -6.4 -0.6 -0.2 -0.4
phage Phage_N4_cage_3_mouse_1_Cecum_40 hr +0.1 -7.4 -0.1 +0.1 -0.1
phage Phage_N4_cage_4_mice _Feces_16 hr +0.1 -7.5 +0.2 -0.2 -0.1
phage Phage_N4_cage_4_mouse_2_Cecum_40 hr +0.1 -7.3 -0.3 -0.0 +0.1
phage Phage_N4_cage_4_mouse_1_Cecum_40 hr +0.3 -7.6 +0.0 +0.0 -0.3
control PBS_cage_2_mouse_2_Cecum_40 hr +0.1 -7.0 -0.0 -0.1 -0.3
control PBS_cage_1_mice _Feces_40 hr +0.2 -6.9 -0.2 -0.5 +0.1
control PBS_cage_2_mice _Feces_22 hr +0.1 -7.2 +0.0 +0.2 -0.4
control PBS_cage_2_mouse_1_Cecum_40 hr -0.0 -6.9 -0.4 +0.2 -0.2
phage Phage_N4_cage_3_mouse_2_Cecum_40 hr -0.0 -7.5 -0.2 +0.3 +0.1
phage Phage_N4_cage_4_mice _Feces_22 hr +0.0 -7.6 -0.0 +0.1 +0.3
phage Phage_N4_cage_4_mouse_3_Cecum_40 hr +0.1 -7.5 -0.0 -0.2 +0.4
control PBS_cage_1_mice _Feces_16 hr +0.2 -6.5 -0.1 -0.0 -0.8
phage Phage_N4_cage_3_mouse_3_Cecum_40 hr +0.1 -6.9 -0.4 -0.1 +0.2
control PBS_cage_1_mouse_2_Cecum_40 hr -0.0 -7.3 +0.1 -0.1 +0.4
control PBS_cage_2_mouse_3_Cecum_40 hr -0.1 -6.9 +0.1 +0.3 +0.2
phage Ste41 +0.0 +6.0 +0.1 -0.1 -2.0
phage RB68 +0.1 +6.3 +0.4 -0.2 -0.7
phage Δdbn_10 -0.2 +8.7 -0.6 -0.4 -0.6
phage Bas60 +0.0 +10.1 +0.1 -0.1 -0.5
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