Fitness for 5 genes in Escherichia coli BW25113

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500 ntyafV and ivy are separated by 153 nucleotidesivy and yafH are separated by 42 nucleotidesyafH and lpcA are separated by 239 nucleotideslpcA and yafJ are separated by 205 nucleotides b0219: yafV - predicted C-N hydrolase family amidase, NAD(P)-binding (NCBI), at 239,419 to 240,189 yafV b0220: ivy - inhibitor of vertebrate C-lysozyme (NCBI), at 240,343 to 240,816 ivy b0221: yafH - putative acyl-CoA dehydrogenase (EC 1.3.99.-) (VIMSS), at 240,859 to 243,303 yafH b0222: lpcA - phosphoheptose isomerase (NCBI), at 243,543 to 244,121 lpcA b0223: yafJ - predicted amidotransfease (NCBI), at 244,327 to 245,094 yafJ
Group Condition b0219 b0220 b0221 b0222 b0223
yafV ivy yafH lpcA yafJ
phage Phage_N4_cage_3_mice _Feces_16 hr -0.8 -0.3 -0.1 -7.6 -0.2
phage Phage_N4_cage_3_mice _Feces_22 hr -0.4 -0.2 -0.0 -7.6 -0.2
phage Phage_N4_cage_3_mice _Feces_40 hr -0.4 +0.0 +0.0 -7.6 -0.1
phage Phage_N4_cage_3_mouse_1_Cecum_40 hr -0.2 -0.4 +0.1 -7.4 -0.1
phage Phage_N4_cage_3_mouse_3_Cecum_40 hr +0.1 -0.7 +0.1 -6.9 -0.4
carbon source Glycolic Acid (C) -0.8 -0.4 -1.6 -4.0 -1.1
control PBS_cage_2_mouse_1_Cecum_40 hr -0.7 +0.2 -0.0 -6.9 -0.4
phage Phage_N4_cage_3_mouse_2_Cecum_40 hr -0.0 +0.1 -0.0 -7.5 -0.2
phage Phage_N4_cage_4_mice _Feces_22 hr -0.0 -0.0 +0.0 -7.6 -0.0
phage Phage_N4_cage_4_mouse_3_Cecum_40 hr +0.1 -0.3 +0.1 -7.5 -0.0
control PBS_cage_1_mice _Feces_22 hr +0.4 -1.0 +0.1 -6.9 -0.2
control PBS_cage_1_mouse_1_Cecum_40 hr -0.1 -0.3 -0.1 -6.8 -0.2
phage Phage_N4_cage_4_mouse_2_Cecum_40 hr +0.0 -0.0 +0.1 -7.3 -0.3
phage Phage_N4_cage_4_mouse_1_Cecum_40 hr -0.2 +0.0 +0.3 -7.6 +0.0
control PBS_cage_2_mouse_3_Cecum_40 hr -0.5 -0.0 -0.1 -6.9 +0.1
phage Phage_N4_cage_4_mice _Feces_40 hr +0.2 +0.0 +0.1 -7.6 -0.1
carbon source Glycolic Acid (C) -0.5 -0.0 -2.0 -3.9 -0.9
control PBS_cage_2_mice _Feces_40 hr -0.3 +0.0 +0.0 -7.1 +0.0
control PBS_cage_2_mouse_2_Cecum_40 hr -0.9 +0.6 +0.1 -7.0 -0.0
control PBS_cage_1_mouse_2_Cecum_40 hr +0.6 -0.5 -0.0 -7.3 +0.1
control PBS_cage_1_mice _Feces_40 hr +0.3 -0.4 +0.2 -6.9 -0.2
carbon source Ying_sugar7 rep A; time point 1 +0.0 +0.2 +0.0 -6.7 -0.5
carbon source Ying_sugar7 rep C; time point 3 +0.2 +0.0 -0.1 -6.3 -0.9
control PBS_cage_2_mice _Feces_22 hr -0.5 +0.5 +0.1 -7.2 +0.0
control PBS_cage_1_mice _Feces_16 hr +0.1 -0.5 +0.2 -6.5 -0.1
phage Phage_N4_cage_4_mice _Feces_16 hr -0.1 +0.5 +0.1 -7.5 +0.2
phage Phage_N4_cage_3_mouse_4_Cecum_40 hr +0.1 +0.5 +0.1 -7.2 -0.2
control PBS_cage_2_mice _Feces_16 hr +0.1 +0.5 +0.1 -7.4 +0.1
phage Δdbn_10 +0.3 -0.1 -0.2 +8.7 -0.6
phage Bas60 +0.2 -0.1 +0.0 +10.1 +0.1
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