Fitness for 5 genes in Escherichia coli BW25113

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500 ntyaeB and rcsF overlap by 4 nucleotidesrcsF and metQ are separated by 117 nucleotidesmetQ and metI are separated by 39 nucleotidesmetI and metN overlap by 8 nucleotides b0195: yaeB - hypothetical protein (NCBI), at 218,887 to 219,594 yaeB b0196: rcsF - predicted outer membrane protein, signal (NCBI), at 219,591 to 219,995 rcsF b0197: metQ - DL-methionine transporter subunit (NCBI), at 220,113 to 220,928 metQ b0198: metI - DL-methionine transporter subunit (NCBI), at 220,968 to 221,621 metI b0199: metN - DL-methionine transporter subunit (NCBI), at 221,614 to 222,645 metN
Group Condition b0195 b0196 b0197 b0198 b0199
yaeB rcsF metQ metI metN
phage Laval1374 -0.3 -6.7 -0.1 +0.2 +0.0
phage Laval1374 -0.3 -5.8 -0.2 +0.2 -0.0
stress Chloride 750 mM -0.1 -3.7 +0.3 -0.1 -0.2
M9 Acetate 0.5% aerobic -0.0 +0.2 -1.0 -1.3 -1.1
carbon source acetate (C) +0.1 -0.0 -1.4 -1.0 -0.7
M9 Acetate 0.5% aerobic +0.3 +0.2 -1.1 -1.2 -1.1
predation 48 hr rep2_HD100_10fold_dilution -0.1 +0.1 -0.8 -0.9 -0.8
carbon source Glycolic Acid (C) +0.5 +0.3 -1.1 -1.3 -0.8
phage Phage_N4_cage_3_mouse_3_Cecum_40 hr -0.9 -0.4 -0.3 -0.2 -0.5
control PBS_cage_1_mice _Feces_40 hr -0.2 -0.5 -0.5 -0.1 -0.9
phage T7_phage 0.00015625 MOI TC3 +0.0 -0.8 -0.8 -0.2 -0.3
predation 48 hr rep3_HD100_10fold_dilution +0.0 +0.0 -0.6 -0.7 -0.7
carbon source Acetate (C) +0.1 +0.1 -0.8 -0.7 -0.7
carbon source acetate (C) +0.3 +0.1 -0.9 -0.8 -0.6
carbon source Acetate (C) +0.2 -0.1 -0.8 -0.5 -0.5
carbon source Glycolic Acid (C) +0.2 +0.7 -0.6 -1.1 -0.8
phage Phage_N4_cage_3_mice _Feces_40 hr -0.4 +0.3 -0.6 -0.4 -0.4
carbon source succinate (C) +0.2 +0.3 -1.0 -0.6 -0.5
stress Bacitracin 1 mg/ml -0.3 -1.3 -0.1 +0.5 +0.0
stress Cephalothin 0.01 mg/ml +0.2 -0.8 +0.3 -0.4 -0.4
phage Ste41 -0.7 -0.9 +0.3 +0.2 +0.2
phage Ste41 -0.5 -0.9 +0.9 +0.3 -0.1
carbon source Ying_sugar7 rep C; time point 3 +0.1 -0.7 +0.5 +0.3 +0.5
plasmid transformation vcDART vector transformation; liquid outgrowth assay +0.4 +0.6 -0.7 +0.5 +0.2
carbon source Ying_Nucleobase14 rep C; time point 3 +0.2 -0.2 +0.9 +0.5 +0.5
carbon source Ying_Nucleobase14 rep B; time point 3 +0.2 +0.0 +1.1 +0.3 +0.5
carbon source D-Serine (C) +0.4 +0.1 +0.5 +0.5 +0.6
stress Benzalkonium Chloride 0.004 mg/ml +0.9 +0.5 +0.2 +0.4 +0.3
carbon source Ying_Nucleobase14 rep A; time point 3 +0.3 +0.3 +0.9 +0.3 +0.5
nitrogen source Putrescine (N) +0.6 +0.1 +0.5 +0.8 +0.6
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