Fitness for 5 genes in Escherichia coli BW25113

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500 ntyadI and yadE are separated by 63 nucleotidesyadE and panD are separated by 3 nucleotidespanD and yadD are separated by 273 nucleotidesyadD and panC are separated by 73 nucleotides b0129: yadI - predicted PTS Enzyme IIA (NCBI), at 144,577 to 145,017 yadI b0130: yadE - predicted polysaccharide deacetylase lipoprotein (NCBI), at 145,081 to 146,310 yadE b0131: panD - aspartate 1-decarboxylase precursor (NCBI), at 146,314 to 146,694 panD b0132: yadD - predicted transposase (NCBI), at 146,968 to 147,870 yadD b0133: panC - pantoate--beta-alanine ligase (NCBI), at 147,944 to 148,795 panC
Group Condition b0129 b0130 b0131 b0132 b0133
yadI yadE panD yadD panC
carbon source D-Glucose (C) MOPS +0.2 +0.1 -3.0 -0.1 -3.4
nitrogen source Adenosine (N) -0.1 +0.3 -3.1 -0.1 -3.0
carbon source D-Glucose (C) M9 +0.1 +0.2 -3.2 -0.1 -2.9
nitrogen source D-Alanine (N) -0.1 -0.1 -3.4 +0.1 -2.2
nitrogen source D-Serine (N) -0.2 +0.0 -2.9 +0.1 -2.6
nitrogen source Adenosine (N) +0.2 +0.2 -2.3 +0.1 -3.3
nitrogen source D-Serine (N) +0.1 +0.1 -2.3 -0.0 -2.6
carbon source D-Galacturonic Acid (C) MOPS +0.2 +0.1 -2.1 -0.2 -2.8
nitrogen source D-Alanine (N) -0.3 +0.1 -1.7 -0.0 -2.5
nitrogen source Ammonium chloride (N) +0.0 +0.2 -2.5 -0.2 -1.9
carbon source D-Glucose (C) -0.1 -0.0 -1.9 +0.1 -1.8
carbon source D-Glucose (C) -0.1 +0.0 -1.6 -0.0 -2.0
carbon source NAG (C) -0.1 +0.0 -1.6 -0.0 -1.6
carbon source D-Galacturonic Acid (C) M9 +0.2 +0.2 -1.7 -0.1 -1.9
nitrogen source L-Glutamine (N) -0.1 -0.0 -1.5 -0.0 -1.5
carbon source NAG (C) -0.1 -0.2 -1.2 -0.0 -1.7
nitrogen source L-Arginine (N) -0.5 +0.0 -1.2 +0.0 -1.4
nitrogen source Ammonium chloride (N) +0.0 +0.1 -1.4 +0.0 -1.7
nitrogen source Cytidine (N) -0.1 -0.0 -1.1 -0.1 -1.7
mzaabcde mzaABCDE -0.3 -0.3 -0.9 -0.4 -1.1
mzaabcde mzaABCDE -0.1 -0.1 -1.1 -0.4 -1.3
nitrogen source casaminos (N) -0.2 +0.1 -1.1 -0.1 -1.6
nitrogen source L-Glutamine (N) -0.1 +0.1 -1.2 +0.1 -1.7
gfp_control GFP_control -0.4 -0.2 -0.6 -0.3 -1.2
nitrogen source Glycine (N) +0.0 +0.1 -2.0 -0.0 -0.8
nitrogen source casaminos (N) -0.1 +0.2 -1.1 -0.1 -1.4
protonated/deuterated protonated control +0.4 +0.1 -1.7 +0.0 -1.3
nitrogen source Cytidine (N) +0.3 -0.1 -0.7 +0.1 -1.6
control PBS_cage_1_mouse_1_Cecum_40 hr -0.7 +0.7 +0.8 +0.3 -0.3
stress LB Aerobic with Irgasan 0.0000003125 mM -0.4 -0.1 +2.0 -0.1 +1.3
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