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Protein
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Fitness for 5 genes in
Escherichia coli BW25113
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
yadI and yadE are separated by 63 nucleotides
yadE and panD are separated by 3 nucleotides
panD and yadD are separated by 273 nucleotides
yadD and panC are separated by 73 nucleotides
b0129: yadI - predicted PTS Enzyme IIA (NCBI), at 144,577 to 145,017
yadI
b0130: yadE - predicted polysaccharide deacetylase lipoprotein (NCBI), at 145,081 to 146,310
yadE
b0131: panD - aspartate 1-decarboxylase precursor (NCBI), at 146,314 to 146,694
panD
b0132: yadD - predicted transposase (NCBI), at 146,968 to 147,870
yadD
b0133: panC - pantoate--beta-alanine ligase (NCBI), at 147,944 to 148,795
panC
Group
Condition
b0129
b0130
b0131
b0132
b0133
yadI
yadE
panD
yadD
panC
carbon source
D-Glucose (C) MOPS
+0.2
+0.1
-3.0
-0.1
-3.4
nitrogen source
Adenosine (N)
-0.1
+0.3
-3.1
-0.1
-3.0
carbon source
D-Glucose (C) M9
+0.1
+0.2
-3.2
-0.1
-2.9
nitrogen source
D-Alanine (N)
-0.1
-0.1
-3.4
+0.1
-2.2
nitrogen source
D-Serine (N)
-0.2
+0.0
-2.9
+0.1
-2.6
nitrogen source
Adenosine (N)
+0.2
+0.2
-2.3
+0.1
-3.3
nitrogen source
D-Serine (N)
+0.1
+0.1
-2.3
-0.0
-2.6
carbon source
D-Galacturonic Acid (C) MOPS
+0.2
+0.1
-2.1
-0.2
-2.8
nitrogen source
D-Alanine (N)
-0.3
+0.1
-1.7
-0.0
-2.5
nitrogen source
Ammonium chloride (N)
+0.0
+0.2
-2.5
-0.2
-1.9
carbon source
D-Glucose (C)
-0.1
-0.0
-1.9
+0.1
-1.8
carbon source
D-Glucose (C)
-0.1
+0.0
-1.6
-0.0
-2.0
carbon source
NAG (C)
-0.1
+0.0
-1.6
-0.0
-1.6
carbon source
D-Galacturonic Acid (C) M9
+0.2
+0.2
-1.7
-0.1
-1.9
nitrogen source
L-Glutamine (N)
-0.1
-0.0
-1.5
-0.0
-1.5
carbon source
NAG (C)
-0.1
-0.2
-1.2
-0.0
-1.7
nitrogen source
L-Arginine (N)
-0.5
+0.0
-1.2
+0.0
-1.4
nitrogen source
Ammonium chloride (N)
+0.0
+0.1
-1.4
+0.0
-1.7
nitrogen source
Cytidine (N)
-0.1
-0.0
-1.1
-0.1
-1.7
mzaabcde
mzaABCDE
-0.3
-0.3
-0.9
-0.4
-1.1
mzaabcde
mzaABCDE
-0.1
-0.1
-1.1
-0.4
-1.3
nitrogen source
casaminos (N)
-0.2
+0.1
-1.1
-0.1
-1.6
nitrogen source
L-Glutamine (N)
-0.1
+0.1
-1.2
+0.1
-1.7
gfp_control
GFP_control
-0.4
-0.2
-0.6
-0.3
-1.2
nitrogen source
Glycine (N)
+0.0
+0.1
-2.0
-0.0
-0.8
nitrogen source
casaminos (N)
-0.1
+0.2
-1.1
-0.1
-1.4
protonated/deuterated
protonated control
+0.4
+0.1
-1.7
+0.0
-1.3
nitrogen source
Cytidine (N)
+0.3
-0.1
-0.7
+0.1
-1.6
control
PBS_cage_1_mouse_1_Cecum_40 hr
-0.7
+0.7
+0.8
+0.3
-0.3
stress
LB Aerobic with Irgasan 0.0000003125 mM
-0.4
-0.1
+2.0
-0.1
+1.3
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