Fitness for 5 genes in Escherichia coli BW25113

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500 ntlpd and yacH are separated by 70 nucleotidesyacH and acnB are separated by 354 nucleotidesacnB and yacL are separated by 175 nucleotidesyacL and speD are separated by 37 nucleotides b0116: lpd - dihydrolipoamide dehydrogenase (NCBI), at 127,912 to 129,336 lpd b0117: yacH - hypothetical protein (NCBI), at 129,407 to 131,260 yacH b0118: acnB - aconitate hydratase (NCBI), at 131,615 to 134,212 acnB b0119: yacL - orf, hypothetical protein (VIMSS), at 134,388 to 134,750 yacL b0120: speD - S-adenosylmethionine decarboxylase proenzyme (NCBI), at 134,788 to 135,582 speD
Group Condition b0116 b0117 b0118 b0119 b0120
lpd yacH acnB yacL speD
carbon source casaminos (C) N.D. -0.1 -2.8 -0.1 -1.3
carbon source Glucose (C) N.D. -0.1 -3.8 -0.0 -0.4
carbon source acetate (C) N.D. -0.1 -3.0 -0.6 -0.5
protonated/deuterated protonated glucose in D2O N.D. +0.1 -4.2 +0.0 -0.0
carbon source D-Ribose (C) N.D. -0.0 -3.2 -0.5 -0.3
carbon source Acetate (C) N.D. -0.2 -3.0 -0.2 -0.5
stress octane 5 vol% N.D. -0.1 -3.6 -0.2 +0.1
carbon source casaminos (C) N.D. +0.0 -3.0 +0.0 -0.8
protonated/deuterated protonated glucose in D2O N.D. +0.0 -3.7 -0.2 +0.1
carbon source acetate (C) N.D. -0.2 -3.0 -0.5 -0.2
stress toluene 2.5 vol% N.D. +0.0 -3.1 -0.6 +0.0
protonated/deuterated protonated control N.D. +0.0 -3.1 -0.3 -0.2
stress capsaicin 1 mM N.D. -0.1 -3.4 -0.1 +0.0
carbon source D-Fructose (C) N.D. +0.0 -3.4 -0.3 +0.0
stress decyl alcohol 5 vol% N.D. -0.0 -3.5 -0.1 +0.1
motility outer cut, LB soft agar motility assay N.D. +0.1 -2.6 -0.6 -0.4
stress decyl alcohol 5 vol% N.D. +0.1 -3.5 -0.1 +0.2
carbon source D-Glucosamine Hydrochloride (C) N.D. -0.2 -3.2 +0.1 +0.1
carbon source succinate (C) N.D. -0.1 -3.0 -0.3 +0.3
carbon source L-Malic (C) N.D. -0.0 -2.9 -0.5 +0.4
nitrogen source Putrescine (N) N.D. -0.2 -3.2 +0.1 +0.5
nitrogen source L-Asparagine (N) N.D. -0.1 -3.2 +0.0 +0.4
carbon source succinate (C) N.D. -0.0 -2.8 -0.4 +0.4
carbon source L-Malic (C) N.D. +0.0 -2.7 -0.5 +0.4
protonated/deuterated deuterated glucose in D2O N.D. -0.0 -3.2 -0.2 +0.8
nitrogen source Gly-DL-Asp (N) N.D. +0.0 -2.7 -0.2 +0.7
nitrogen source Gly-DL-Asp (N) N.D. +0.1 -3.0 +0.0 +0.6
motility outer cut, LB soft agar motility assay N.D. +0.3 -2.8 -0.2 +0.5
stress Nalidixic 0.006 mg/ml N.D. +0.1 +2.9 +1.4 +0.1
stress Chlorite 1.25 mM N.D. +0.3 +5.4 -0.4 -0.4
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