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Protein
Homologs
Fitness for 5 genes in
Escherichia coli BW25113
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500 nt
lpd and yacH are separated by 70 nucleotides
yacH and acnB are separated by 354 nucleotides
acnB and yacL are separated by 175 nucleotides
yacL and speD are separated by 37 nucleotides
b0116: lpd - dihydrolipoamide dehydrogenase (NCBI), at 127,912 to 129,336
lpd
b0117: yacH - hypothetical protein (NCBI), at 129,407 to 131,260
yacH
b0118: acnB - aconitate hydratase (NCBI), at 131,615 to 134,212
acnB
b0119: yacL - orf, hypothetical protein (VIMSS), at 134,388 to 134,750
yacL
b0120: speD - S-adenosylmethionine decarboxylase proenzyme (NCBI), at 134,788 to 135,582
speD
Group
Condition
b0116
b0117
b0118
b0119
b0120
lpd
yacH
acnB
yacL
speD
carbon source
casaminos (C)
N.D.
-0.1
-2.8
-0.1
-1.3
carbon source
Glucose (C)
N.D.
-0.1
-3.8
-0.0
-0.4
carbon source
acetate (C)
N.D.
-0.1
-3.0
-0.6
-0.5
protonated/deuterated
protonated glucose in D2O
N.D.
+0.1
-4.2
+0.0
-0.0
carbon source
D-Ribose (C)
N.D.
-0.0
-3.2
-0.5
-0.3
carbon source
Acetate (C)
N.D.
-0.2
-3.0
-0.2
-0.5
stress
octane 5 vol%
N.D.
-0.1
-3.6
-0.2
+0.1
carbon source
casaminos (C)
N.D.
+0.0
-3.0
+0.0
-0.8
protonated/deuterated
protonated glucose in D2O
N.D.
+0.0
-3.7
-0.2
+0.1
carbon source
acetate (C)
N.D.
-0.2
-3.0
-0.5
-0.2
stress
toluene 2.5 vol%
N.D.
+0.0
-3.1
-0.6
+0.0
protonated/deuterated
protonated control
N.D.
+0.0
-3.1
-0.3
-0.2
stress
capsaicin 1 mM
N.D.
-0.1
-3.4
-0.1
+0.0
carbon source
D-Fructose (C)
N.D.
+0.0
-3.4
-0.3
+0.0
stress
decyl alcohol 5 vol%
N.D.
-0.0
-3.5
-0.1
+0.1
motility
outer cut, LB soft agar motility assay
N.D.
+0.1
-2.6
-0.6
-0.4
stress
decyl alcohol 5 vol%
N.D.
+0.1
-3.5
-0.1
+0.2
carbon source
D-Glucosamine Hydrochloride (C)
N.D.
-0.2
-3.2
+0.1
+0.1
carbon source
succinate (C)
N.D.
-0.1
-3.0
-0.3
+0.3
carbon source
L-Malic (C)
N.D.
-0.0
-2.9
-0.5
+0.4
nitrogen source
Putrescine (N)
N.D.
-0.2
-3.2
+0.1
+0.5
nitrogen source
L-Asparagine (N)
N.D.
-0.1
-3.2
+0.0
+0.4
carbon source
succinate (C)
N.D.
-0.0
-2.8
-0.4
+0.4
carbon source
L-Malic (C)
N.D.
+0.0
-2.7
-0.5
+0.4
protonated/deuterated
deuterated glucose in D2O
N.D.
-0.0
-3.2
-0.2
+0.8
nitrogen source
Gly-DL-Asp (N)
N.D.
+0.0
-2.7
-0.2
+0.7
nitrogen source
Gly-DL-Asp (N)
N.D.
+0.1
-3.0
+0.0
+0.6
motility
outer cut, LB soft agar motility assay
N.D.
+0.3
-2.8
-0.2
+0.5
stress
Nalidixic 0.006 mg/ml
N.D.
+0.1
+2.9
+1.4
+0.1
stress
Chlorite 1.25 mM
N.D.
+0.3
+5.4
-0.4
-0.4
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