Fitness for 5 genes in Escherichia coli BW25113

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500 ntppdD and nadC are separated by 202 nucleotidesnadC and ampD are separated by 87 nucleotidesampD and ampE overlap by 4 nucleotidesampE and aroP are separated by 42 nucleotides b0108: ppdD - predicted major pilin subunit (NCBI), at 117,109 to 117,549 ppdD b0109: nadC - nicotinate-nucleotide pyrophosphorylase (NCBI), at 117,752 to 118,645 nadC b0110: ampD - N-acetyl-anhydromuranmyl-L-alanine amidase (NCBI), at 118,733 to 119,284 ampD b0111: ampE - predicted inner membrane protein (NCBI), at 119,281 to 120,135 ampE b0112: aroP - aromatic amino acid transporter (NCBI), at 120,178 to 121,551 aroP
Group Condition b0108 b0109 b0110 b0111 b0112
ppdD nadC ampD ampE aroP
carbon source D-Glucose-6-Phosphate (C) -0.3 -2.9 -0.3 -0.2 -0.1
stress LB Anaerobic with Cephalothin 0.0000078125 mM -0.4 -0.0 -3.1 -0.2 -0.0
stress LB Anaerobic with Cephalothin 0.0000078125 mM -0.3 +0.2 -3.6 +0.2 -0.1
carbon source casaminos (C) -0.1 -2.9 -0.2 -0.0 +0.1
nitrogen source Adenosine (N) +0.0 -2.9 -0.3 -0.0 -0.0
carbon source D-Glucose-6-Phosphate (C) -0.0 -2.6 -0.1 -0.2 -0.2
nitrogen source Adenosine (N) -0.1 -2.5 -0.4 -0.2 +0.1
carbon source Ying_Nucleobase14 rep C; time point 3 +0.0 -2.2 -0.1 -0.2 -0.5
protonated/deuterated deuterated glucose in H2O -0.6 -1.9 +0.0 -0.3 -0.2
nitrogen source Cytidine (N) -0.2 -2.7 -0.2 +0.1 +0.1
carbon source Ying_Nucleobase14 rep A; time point 3 -0.3 -2.0 -0.2 +0.0 -0.4
carbon source L-Malic (C) -0.2 -2.1 -0.1 -0.2 -0.2
carbon source D-Galacturonic Acid (C) MOPS -0.0 -2.4 -0.3 +0.0 -0.1
carbon source D-Galacturonic Acid (C) M9 -0.1 -2.1 -0.2 +0.0 -0.3
carbon source D-Glucose (C) MOPS -0.7 -2.0 -0.0 +0.0 +0.0
carbon source Ying_Nucleobase14 rep B; time point 3 -0.1 -2.0 -0.1 -0.1 -0.3
nitrogen source Cytidine (N) +0.2 -2.7 -0.3 +0.1 +0.0
carbon source succinate (C) -0.3 -1.4 -0.4 -0.1 -0.4
M9 Glucose 2% aerobic -0.0 -2.3 -0.1 -0.2 -0.0
carbon source D-Glucose (C) MOPS -0.2 -2.1 -0.2 +0.0 -0.0
carbon source D-Galacturonic Acid (C) MOPS +0.1 -2.0 -0.2 -0.1 -0.1
carbon source L-Malic (C) +0.4 -2.1 -0.3 -0.2 -0.2
stress LB Anaerobic with Amoxicillin 0.0000078125 mM -0.3 +0.3 -1.8 +0.0 -0.2
carbon source casaminos (C) +0.4 -2.6 +0.1 -0.0 +0.2
protonated/deuterated protonated glucose in D2O +0.4 -1.9 -0.1 +0.1 -0.3
stress Cephalothin 0.01 mg/ml +0.1 +0.3 -1.7 -0.2 -0.4
stress Cisplatin 0.1 mg/ml +0.8 +0.2 -1.0 +0.3 -0.6
stress LB Aerobic with Doxycycline hyclate 0.00000625 mM -1.0 +0.4 +0.9 -0.1 -0.1
stress octanol 0.08 vol% -0.1 +0.3 +2.4 -0.1 +0.3
stress LB Anaerobic with Benzethonium chloride 0.00003125 mM +0.5 +0.9 +1.8 +0.1 -0.2
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