Fitness for 5 genes in Escherichia coli BW25113

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500 ntsurA and imp are separated by 52 nucleotidesimp and djlA are separated by 254 nucleotidesdjlA and yabP are separated by 294 nucleotidesyabP and rluA are separated by 634 nucleotides b0053: surA - peptidyl-prolyl cis-trans isomerase (PPIase) (NCBI), at 53,416 to 54,702 surA b0054: imp - organic solvent tolerance protein precursor (NCBI), at 54,755 to 57,109 imp b0055: djlA - Dna-J like membrane chaperone protein (NCBI), at 57,364 to 58,179 djlA b4659: yabP - no description, at 58,474 to 59,052 yabP b0058: rluA - pseudouridine synthase for 23S rRNA (position 746) and tRNAphe(position 32) (NCBI), at 59,687 to 60,346 rluA
Group Condition b0053 b0054 b0055 b4659 b0058
surA imp djlA yabP rluA
control PBS_cage_2_mouse_1_Cecum_40 hr -6.3 N.D. -0.4 -0.1 -0.4
gfp_control GFP_control -5.0 N.D. -0.7 -0.0 -0.5
retron_ec_48_control retron_Ec_48_control -5.4 N.D. -0.4 -0.2 -0.3
retron_ec_48_control retron_Ec_48_control -5.2 N.D. -0.4 -0.1 -0.4
mzaabcde mzaABCDE -5.1 N.D. -0.7 -0.1 -0.2
sir2-hera SIR2-HerA -5.5 N.D. -0.4 -0.1 -0.2
drt_type_3 DRT_type_3 -5.2 N.D. -0.4 -0.1 -0.3
drt_type_3 DRT_type_3 -5.3 N.D. -0.4 -0.1 -0.3
phage Phage_N4_cage_3_mouse_3_Cecum_40 hr -6.4 N.D. +0.4 +0.1 -0.0
ppi ppI -5.3 N.D. -0.3 -0.0 -0.3
drt_type_3 DRT_type_3 -5.3 N.D. -0.4 -0.1 -0.2
retron_ec_48_control retron_Ec_48_control -5.2 N.D. -0.3 -0.1 -0.1
ppi ppI -5.2 N.D. -0.4 -0.1 -0.1
ppi ppI -5.4 N.D. -0.3 -0.1 +0.0
mzaabcde mzaABCDE -5.1 N.D. -0.2 +0.1 -0.5
gfp_control GFP_control -5.2 N.D. -0.4 -0.0 +0.0
control PBS_cage_2_mouse_2_Cecum_40 hr -4.9 N.D. -0.5 -0.0 -0.2
mzaabcde mzaABCDE -4.7 N.D. -0.5 -0.1 -0.3
phage Phage_N4_cage_3_mouse_4_Cecum_40 hr -5.1 N.D. -0.4 -0.1 +0.1
sir2-hera SIR2-HerA -4.8 N.D. -0.3 -0.1 -0.2
stress Nalidixic 0.006 mg/ml -5.1 N.D. +0.1 -0.1 -0.3
sir2-hera SIR2-HerA -5.1 N.D. -0.2 -0.0 +0.0
carbon source Dodecanol (C) -4.5 N.D. -0.1 -0.2 -0.3
control PBS_cage_2_mice _Feces_40 hr -4.6 N.D. -0.3 +0.0 -0.2
stress Benzalkonium Chloride 0.004 mg/ml -1.9 N.D. -2.3 -0.5 -0.4
carbon source Dodecanol and Rhamnolipid (C) -4.5 N.D. +0.2 -0.1 -0.4
control PBS_cage_2_mice _Feces_22 hr -4.6 N.D. -0.3 +0.1 +0.1
stress octanol 0.08 vol% -3.6 N.D. +0.1 +0.3 -1.1
phage T7_phage 0.00015625 MOI TC3 +4.5 N.D. -0.5 +0.1 -1.0
phage T7_phage 0.0015625 MOI TC2 +5.7 N.D. +0.0 -0.3 +0.1
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