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Protein
Homologs
Fitness for 5 genes in
Escherichia coli BW25113
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500 nt
surA and imp are separated by 52 nucleotides
imp and djlA are separated by 254 nucleotides
djlA and yabP are separated by 294 nucleotides
yabP and rluA are separated by 634 nucleotides
b0053: surA - peptidyl-prolyl cis-trans isomerase (PPIase) (NCBI), at 53,416 to 54,702
surA
b0054: imp - organic solvent tolerance protein precursor (NCBI), at 54,755 to 57,109
imp
b0055: djlA - Dna-J like membrane chaperone protein (NCBI), at 57,364 to 58,179
djlA
b4659: yabP - no description, at 58,474 to 59,052
yabP
b0058: rluA - pseudouridine synthase for 23S rRNA (position 746) and tRNAphe(position 32) (NCBI), at 59,687 to 60,346
rluA
Group
Condition
b0053
b0054
b0055
b4659
b0058
surA
imp
djlA
yabP
rluA
control
PBS_cage_2_mouse_1_Cecum_40 hr
-6.3
N.D.
-0.4
-0.1
-0.4
gfp_control
GFP_control
-5.0
N.D.
-0.7
-0.0
-0.5
retron_ec_48_control
retron_Ec_48_control
-5.4
N.D.
-0.4
-0.2
-0.3
retron_ec_48_control
retron_Ec_48_control
-5.2
N.D.
-0.4
-0.1
-0.4
mzaabcde
mzaABCDE
-5.1
N.D.
-0.7
-0.1
-0.2
sir2-hera
SIR2-HerA
-5.5
N.D.
-0.4
-0.1
-0.2
drt_type_3
DRT_type_3
-5.2
N.D.
-0.4
-0.1
-0.3
drt_type_3
DRT_type_3
-5.3
N.D.
-0.4
-0.1
-0.3
phage
Phage_N4_cage_3_mouse_3_Cecum_40 hr
-6.4
N.D.
+0.4
+0.1
-0.0
ppi
ppI
-5.3
N.D.
-0.3
-0.0
-0.3
drt_type_3
DRT_type_3
-5.3
N.D.
-0.4
-0.1
-0.2
retron_ec_48_control
retron_Ec_48_control
-5.2
N.D.
-0.3
-0.1
-0.1
ppi
ppI
-5.2
N.D.
-0.4
-0.1
-0.1
ppi
ppI
-5.4
N.D.
-0.3
-0.1
+0.0
mzaabcde
mzaABCDE
-5.1
N.D.
-0.2
+0.1
-0.5
gfp_control
GFP_control
-5.2
N.D.
-0.4
-0.0
+0.0
control
PBS_cage_2_mouse_2_Cecum_40 hr
-4.9
N.D.
-0.5
-0.0
-0.2
mzaabcde
mzaABCDE
-4.7
N.D.
-0.5
-0.1
-0.3
phage
Phage_N4_cage_3_mouse_4_Cecum_40 hr
-5.1
N.D.
-0.4
-0.1
+0.1
sir2-hera
SIR2-HerA
-4.8
N.D.
-0.3
-0.1
-0.2
stress
Nalidixic 0.006 mg/ml
-5.1
N.D.
+0.1
-0.1
-0.3
sir2-hera
SIR2-HerA
-5.1
N.D.
-0.2
-0.0
+0.0
carbon source
Dodecanol (C)
-4.5
N.D.
-0.1
-0.2
-0.3
control
PBS_cage_2_mice _Feces_40 hr
-4.6
N.D.
-0.3
+0.0
-0.2
stress
Benzalkonium Chloride 0.004 mg/ml
-1.9
N.D.
-2.3
-0.5
-0.4
carbon source
Dodecanol and Rhamnolipid (C)
-4.5
N.D.
+0.2
-0.1
-0.4
control
PBS_cage_2_mice _Feces_22 hr
-4.6
N.D.
-0.3
+0.1
+0.1
stress
octanol 0.08 vol%
-3.6
N.D.
+0.1
+0.3
-1.1
phage
T7_phage 0.00015625 MOI TC3
+4.5
N.D.
-0.5
+0.1
-1.0
phage
T7_phage 0.0015625 MOI TC2
+5.7
N.D.
+0.0
-0.3
+0.1
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