Gene info for PfGW456L13_3648 in Pseudomonas fluorescens GW456-L13

Updated annotation (from data): D-serine ammonia-lyase (EC 4.3.1.18)
Rationale: Specifically important for utilizing D-Serine. Automated validation from mutant phenotype: the predicted function (4.3.1.18) was linked to the condition via a SEED subsystem. This annotation was also checked manually.
Original annotation: D-serine dehydratase (EC 4.3.1.18)
Type 1: Protein-coding gene
Located on scaffold scaffold1/0|quiver|pilon, - strand, nucleotides 4,106,019 to 4,107,371
See nucleotide sequence around PfGW456L13_3648 or for all of scaffold scaffold1/0|quiver|pilon

Other databases: uniprot: A0A293QQL5

Nearby Genes

500 ntPfGW456L13_3643 and PfGW456L13_3644 are separated by 756 nucleotidesPfGW456L13_3644 and PfGW456L13_3645 are separated by 173 nucleotidesPfGW456L13_3645 and PfGW456L13_3646 are separated by 172 nucleotidesPfGW456L13_3646 and PfGW456L13_3647 are separated by 8 nucleotidesPfGW456L13_3647 and PfGW456L13_3648 are separated by 139 nucleotidesPfGW456L13_3648 and PfGW456L13_3649 are separated by 43 nucleotidesPfGW456L13_3649 and PfGW456L13_3650 are separated by 409 nucleotidesPfGW456L13_3650 and PfGW456L13_3651 are separated by 261 nucleotidesPfGW456L13_3651 and PfGW456L13_3652 are separated by 117 nucleotidesPfGW456L13_3652 and PfGW456L13_3653 are separated by 280 nucleotides PfGW456L13_3643 - hypothetical protein, at 4,102,074 to 4,102,238 _3643 PfGW456L13_3644 - dioxygenase, at 4,102,995 to 4,103,450 _3644 PfGW456L13_3645 - Transcriptional regulator, AsnC family, at 4,103,624 to 4,104,076 _3645 PfGW456L13_3646 - Transporter, LysE family, at 4,104,249 to 4,104,878 _3646 PfGW456L13_3647 - D-serine dehydratase transcriptional activator, at 4,104,887 to 4,105,879 _3647 PfGW456L13_3648 - D-serine ammonia-lyase (EC 4.3.1.18) (from data), at 4,106,019 to 4,107,371 _3648 PfGW456L13_3649 - D-serine permease (from data), at 4,107,415 to 4,108,755 _3649 PfGW456L13_3650 - putative lipoprotein, at 4,109,165 to 4,110,376 _3650 PfGW456L13_3651 - Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain, at 4,110,638 to 4,111,579 _3651 PfGW456L13_3652 - Aspartyl-tRNA(Asn) amidotransferase subunit A (EC 6.3.5.6) @ Glutamyl-tRNA(Gln) amidotransferase subunit A (EC 6.3.5.7), at 4,111,697 to 4,113,145 _3652 PfGW456L13_3653 - FIG024746: hypothetical protein, at 4,113,426 to 4,113,872 _3653
Locus Name Description Strand Phenotype
PfGW456L13_3643 hypothetical protein + no data
PfGW456L13_3644 dioxygenase + insig.
PfGW456L13_3645 Transcriptional regulator, AsnC family - insig.
PfGW456L13_3646 Transporter, LysE family + insig.
PfGW456L13_3647 D-serine dehydratase transcriptional activator - strong
PfGW456L13_3648 D-serine ammonia-lyase (EC 4.3.1.18) (from data) - strong
PfGW456L13_3649 D-serine permease (from data) - strong
PfGW456L13_3650 putative lipoprotein + insig.
PfGW456L13_3651 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain + insig.
PfGW456L13_3652 Aspartyl-tRNA(Asn) amidotransferase subunit A (EC 6.3.5.6) @ Glutamyl-tRNA(Gln) amidotransferase subunit A (EC 6.3.5.7) - insig.
PfGW456L13_3653 FIG024746: hypothetical protein - insig.

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