Gene info for PfGW456L13_3320 in Pseudomonas fluorescens GW456-L13

Updated annotation (from data): L-arabonate dehydratase (EC 4.2.1.25)
Rationale: Specifically important for utilizing L-Arabinose. Automated validation from mutant phenotype: the predicted function (L-ARABINONATE-DEHYDRATASE-RXN) was linked to the condition via a MetaCyc pathway. This annotation was also checked manually.
Original annotation: L-arabonate dehydratase (EC 4.2.1.25)
Type 1: Protein-coding gene
Located on scaffold scaffold1/0|quiver|pilon, + strand, nucleotides 3,728,928 to 3,730,664
See nucleotide sequence around PfGW456L13_3320 or for all of scaffold scaffold1/0|quiver|pilon

Other databases: uniprot: A0A293QS76

Nearby Genes

500 ntPfGW456L13_3315 and PfGW456L13_3316 are separated by 119 nucleotidesPfGW456L13_3316 and PfGW456L13_3317 are separated by 10 nucleotidesPfGW456L13_3317 and PfGW456L13_3318 are separated by 160 nucleotidesPfGW456L13_3318 and PfGW456L13_3319 are separated by 110 nucleotidesPfGW456L13_3319 and PfGW456L13_3320 overlap by 36 nucleotidesPfGW456L13_3320 and PfGW456L13_3321 are separated by 172 nucleotidesPfGW456L13_3321 and PfGW456L13_3322 are separated by 176 nucleotidesPfGW456L13_3322 and PfGW456L13_3323 are separated by 28 nucleotidesPfGW456L13_3323 and PfGW456L13_3324 are separated by 491 nucleotidesPfGW456L13_3324 and PfGW456L13_3325 are separated by 424 nucleotides PfGW456L13_3315 - FIG00955242: hypothetical protein, at 3,724,209 to 3,724,547 _3315 PfGW456L13_3316 - Ketoglutarate semialdehyde dehydrogenase (EC 1.2.1.26), at 3,724,667 to 3,726,247 _3316 PfGW456L13_3317 - 2-dehydro-3-deoxy-L-arabinonate dehydratase (EC 4.2.1.43) (from data), at 3,726,258 to 3,727,250 _3317 PfGW456L13_3318 - Nitrate/nitrite transporter, at 3,727,411 to 3,728,733 _3318 PfGW456L13_3319 - hypothetical protein, at 3,728,844 to 3,728,963 _3319 PfGW456L13_3320 - L-arabonate dehydratase (EC 4.2.1.25) (from data), at 3,728,928 to 3,730,664 _3320 PfGW456L13_3321 - Transcriptional regulator of the arabinose operon in Shewanella, GntR family, at 3,730,837 to 3,731,556 _3321 PfGW456L13_3322 - FIG005548: transport protein, at 3,731,733 to 3,734,117 _3322 PfGW456L13_3323 - FIG002465: BNR repeat protein, at 3,734,146 to 3,735,183 _3323 PfGW456L13_3324 - FIG00461010: hypothetical protein, at 3,735,675 to 3,736,007 _3324 PfGW456L13_3325 - Membrane alanine aminopeptidase N (EC 3.4.11.2), at 3,736,432 to 3,739,089 _3325
Locus Name Description Strand Phenotype
PfGW456L13_3315 FIG00955242: hypothetical protein - insig.
PfGW456L13_3316 Ketoglutarate semialdehyde dehydrogenase (EC 1.2.1.26) - insig.
PfGW456L13_3317 2-dehydro-3-deoxy-L-arabinonate dehydratase (EC 4.2.1.43) (from data) - strong
PfGW456L13_3318 Nitrate/nitrite transporter - sig.
PfGW456L13_3319 hypothetical protein - no data
PfGW456L13_3320 L-arabonate dehydratase (EC 4.2.1.25) (from data) + strong
PfGW456L13_3321 Transcriptional regulator of the arabinose operon in Shewanella, GntR family + insig.
PfGW456L13_3322 FIG005548: transport protein - cofit
PfGW456L13_3323 FIG002465: BNR repeat protein - sig.
PfGW456L13_3324 FIG00461010: hypothetical protein - insig.
PfGW456L13_3325 Membrane alanine aminopeptidase N (EC 3.4.11.2) - sig.

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