Gene info for PfGW456L13_3317 in Pseudomonas fluorescens GW456-L13

Updated annotation (from data): 2-dehydro-3-deoxy-L-arabinonate dehydratase (EC 4.2.1.43)
Rationale: Specifically important in carbon source L-Arabinose. Similar to PA2216 from Pseudomonas aeruginosa (see PMC:PMC4038344) and to gguC or araD1 (Atu2345) from Agrobacterium tumefaciens (see PMC: PMC3232879), which also have this activity. In Agrobacterium, this reaction is proposed to be a step in L-arabinose oxidation. (Note that 2-keto-3-deoxy-L-lyxonate and 2-keto-3-deoxy-L-arabinonate are the same compound.)
Original annotation: SUGAR TRANSPORTER
Type 1: Protein-coding gene
Located on scaffold scaffold1/0|quiver|pilon, - strand, nucleotides 3,726,258 to 3,727,250
See nucleotide sequence around PfGW456L13_3317 or for all of scaffold scaffold1/0|quiver|pilon

Other databases: uniprot: A0A293QMA8

Nearby Genes

500 ntPfGW456L13_3312 and PfGW456L13_3313 are separated by 216 nucleotidesPfGW456L13_3313 and PfGW456L13_3314 are separated by 156 nucleotidesPfGW456L13_3314 and PfGW456L13_3315 overlap by 8 nucleotidesPfGW456L13_3315 and PfGW456L13_3316 are separated by 119 nucleotidesPfGW456L13_3316 and PfGW456L13_3317 are separated by 10 nucleotidesPfGW456L13_3317 and PfGW456L13_3318 are separated by 160 nucleotidesPfGW456L13_3318 and PfGW456L13_3319 are separated by 110 nucleotidesPfGW456L13_3319 and PfGW456L13_3320 overlap by 36 nucleotidesPfGW456L13_3320 and PfGW456L13_3321 are separated by 172 nucleotidesPfGW456L13_3321 and PfGW456L13_3322 are separated by 176 nucleotides PfGW456L13_3312 - hypothetical protein, at 3,722,369 to 3,722,494 _3312 PfGW456L13_3313 - FIG00957600: hypothetical protein, at 3,722,711 to 3,722,890 _3313 PfGW456L13_3314 - D-galactono-lactonase (EC 3.1.1.-) (from data), at 3,723,047 to 3,724,216 _3314 PfGW456L13_3315 - FIG00955242: hypothetical protein, at 3,724,209 to 3,724,547 _3315 PfGW456L13_3316 - Ketoglutarate semialdehyde dehydrogenase (EC 1.2.1.26), at 3,724,667 to 3,726,247 _3316 PfGW456L13_3317 - 2-dehydro-3-deoxy-L-arabinonate dehydratase (EC 4.2.1.43) (from data), at 3,726,258 to 3,727,250 _3317 PfGW456L13_3318 - Nitrate/nitrite transporter, at 3,727,411 to 3,728,733 _3318 PfGW456L13_3319 - hypothetical protein, at 3,728,844 to 3,728,963 _3319 PfGW456L13_3320 - L-arabonate dehydratase (EC 4.2.1.25) (from data), at 3,728,928 to 3,730,664 _3320 PfGW456L13_3321 - Transcriptional regulator of the arabinose operon in Shewanella, GntR family, at 3,730,837 to 3,731,556 _3321 PfGW456L13_3322 - FIG005548: transport protein, at 3,731,733 to 3,734,117 _3322
Locus Name Description Strand Phenotype
PfGW456L13_3312 hypothetical protein - no data
PfGW456L13_3313 FIG00957600: hypothetical protein - insig.
PfGW456L13_3314 D-galactono-lactonase (EC 3.1.1.-) (from data) - strong
PfGW456L13_3315 FIG00955242: hypothetical protein - insig.
PfGW456L13_3316 Ketoglutarate semialdehyde dehydrogenase (EC 1.2.1.26) - insig.
PfGW456L13_3317 2-dehydro-3-deoxy-L-arabinonate dehydratase (EC 4.2.1.43) (from data) - strong
PfGW456L13_3318 Nitrate/nitrite transporter - sig.
PfGW456L13_3319 hypothetical protein - no data
PfGW456L13_3320 L-arabonate dehydratase (EC 4.2.1.25) (from data) + strong
PfGW456L13_3321 Transcriptional regulator of the arabinose operon in Shewanella, GntR family + insig.
PfGW456L13_3322 FIG005548: transport protein - cofit

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