Gene info for PfGW456L13_2016 in Pseudomonas fluorescens GW456-L13

Updated annotation (from data): C4-dicarboxylate transporter
Rationale: Specific phenotype: utilization of L-Malic acid, succinate, Tween 20; the phenotype on Tween 20 is not explained
Original annotation: Aerobic C4-dicarboxylate transporter for fumarate, L-malate, D-malate, succunate, aspartate
Type 1: Protein-coding gene
Located on scaffold scaffold1/0|quiver|pilon, + strand, nucleotides 2,219,599 to 2,220,933
See nucleotide sequence around PfGW456L13_2016 or for all of scaffold scaffold1/0|quiver|pilon

Other databases: uniprot: A0A293QNX5

Nearby Genes

500 ntPfGW456L13_2011 and PfGW456L13_2012 overlap by 4 nucleotidesPfGW456L13_2012 and PfGW456L13_2013 are separated by 196 nucleotidesPfGW456L13_2013 and PfGW456L13_2014 are separated by 44 nucleotidesPfGW456L13_2014 and PfGW456L13_2015 are separated by 183 nucleotidesPfGW456L13_2015 and PfGW456L13_2016 are separated by 24 nucleotidesPfGW456L13_2016 and PfGW456L13_2017 are separated by 156 nucleotidesPfGW456L13_2017 and PfGW456L13_2018 are separated by 120 nucleotidesPfGW456L13_2018 and PfGW456L13_2019 are separated by 157 nucleotidesPfGW456L13_2019 and PfGW456L13_2020 are separated by 282 nucleotidesPfGW456L13_2020 and PfGW456L13_2021 are separated by 197 nucleotides PfGW456L13_2011 - Transcriptional regulatory protein PhoP, at 2,215,244 to 2,215,921 _2011 PfGW456L13_2012 - Sensor protein PhoQ (EC 2.7.13.3), at 2,215,918 to 2,217,264 _2012 PfGW456L13_2013 - Peptidoglycan N-acetylglucosamine deacetylase (EC 3.5.1.-), at 2,217,461 to 2,218,216 _2013 PfGW456L13_2014 - Transcriptional regulator, AraC family, at 2,218,261 to 2,219,259 _2014 PfGW456L13_2015 - hypothetical protein, at 2,219,443 to 2,219,574 _2015 PfGW456L13_2016 - C4-dicarboxylate transporter (from data), at 2,219,599 to 2,220,933 _2016 PfGW456L13_2017 - Alpha-methylacyl-CoA racemase (EC 5.1.99.4), at 2,221,090 to 2,222,271 _2017 PfGW456L13_2018 - Protein sprT, at 2,222,392 to 2,222,886 _2018 PfGW456L13_2019 - probable membrane protein YPO2362, at 2,223,044 to 2,223,646 _2019 PfGW456L13_2020 - tRNA(Cytosine32)-2-thiocytidine synthetase, at 2,223,929 to 2,224,753 _2020 PfGW456L13_2021 - DNA-3-methyladenine glycosylase (EC 3.2.2.20), at 2,224,951 to 2,225,625 _2021
Locus Name Description Strand Phenotype
PfGW456L13_2011 Transcriptional regulatory protein PhoP + strong
PfGW456L13_2012 Sensor protein PhoQ (EC 2.7.13.3) + strong
PfGW456L13_2013 Peptidoglycan N-acetylglucosamine deacetylase (EC 3.5.1.-) + insig.
PfGW456L13_2014 Transcriptional regulator, AraC family - insig.
PfGW456L13_2015 hypothetical protein - strong
PfGW456L13_2016 C4-dicarboxylate transporter (from data) + strong
PfGW456L13_2017 Alpha-methylacyl-CoA racemase (EC 5.1.99.4) + insig.
PfGW456L13_2018 Protein sprT - insig.
PfGW456L13_2019 probable membrane protein YPO2362 - insig.
PfGW456L13_2020 tRNA(Cytosine32)-2-thiocytidine synthetase + insig.
PfGW456L13_2021 DNA-3-methyladenine glycosylase (EC 3.2.2.20) + insig.

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