Gene info for PagCFBP13516_RS12865 in Pantoea agglomerans CFBP13505 P0401

Name: ldtD
Annotation: L,D-transpeptidase
Type 1: Protein-coding gene
Located on scaffold NZ_CM143256, - strand, nucleotides 2,722,948 to 2,724,759
See nucleotide sequence around PagCFBP13516_RS12865 or for all of scaffold NZ_CM143256

Other databases: NCBI, other: PagCFBP13505_RS04550

Nearby Genes

500 ntasnS and ompF are separated by 300 nucleotidesompF and PagCFBP13516_RS12850 are separated by 233 nucleotidesPagCFBP13516_RS12850 and PagCFBP13516_RS12855 are separated by 42 nucleotidesPagCFBP13516_RS12855 and PagCFBP13516_RS12860 are separated by 39 nucleotidesPagCFBP13516_RS12860 and ldtD are separated by 185 nucleotidesldtD and mukB are separated by 147 nucleotidesmukB and mukE overlap by 4 nucleotidesmukE and mukF overlap by 20 nucleotidesmukF and cmoM overlap by 4 nucleotidescmoM and elyC are separated by 125 nucleotides PagCFBP13516_RS12840: asnS - asparagine--tRNA ligase, at 2,717,232 to 2,718,632 asnS PagCFBP13516_RS12845: ompF - porin OmpF, at 2,718,933 to 2,720,078 ompF PagCFBP13516_RS12850: PagCFBP13516_RS12850 - amino acid aminotransferase, at 2,720,312 to 2,721,502 _RS12850 PagCFBP13516_RS12855: PagCFBP13516_RS12855 - MBL fold metallo-hydrolase, at 2,721,545 to 2,722,174 _RS12855 PagCFBP13516_RS12860: PagCFBP13516_RS12860 - YcbK family protein, at 2,722,214 to 2,722,762 _RS12860 PagCFBP13516_RS12865: ldtD - L,D-transpeptidase, at 2,722,948 to 2,724,759 ldtD PagCFBP13516_RS12870: mukB - chromosome partition protein MukB, at 2,724,907 to 2,729,394 mukB PagCFBP13516_RS12875: mukE - chromosome partition protein MukE, at 2,729,391 to 2,730,116 mukE PagCFBP13516_RS12880: mukF - chromosome partition protein MukF, at 2,730,097 to 2,731,419 mukF PagCFBP13516_RS12885: cmoM - tRNA uridine 5-oxyacetic acid(34) methyltransferase CmoM, at 2,731,416 to 2,732,201 cmoM PagCFBP13516_RS12890: elyC - envelope biogenesis factor ElyC, at 2,732,327 to 2,733,112 elyC
Locus Name Description Strand Phenotype
PagCFBP13516_RS12840 asnS asparagine--tRNA ligase + no data
PagCFBP13516_RS12845 ompF porin OmpF + cofit
PagCFBP13516_RS12850 PagCFBP13516_RS12850 amino acid aminotransferase + strong
PagCFBP13516_RS12855 PagCFBP13516_RS12855 MBL fold metallo-hydrolase - cofit
PagCFBP13516_RS12860 PagCFBP13516_RS12860 YcbK family protein - cofit
PagCFBP13516_RS12865 ldtD L,D-transpeptidase - cofit
PagCFBP13516_RS12870 mukB chromosome partition protein MukB - no data
PagCFBP13516_RS12875 mukE chromosome partition protein MukE - no data
PagCFBP13516_RS12880 mukF chromosome partition protein MukF - no data
PagCFBP13516_RS12885 cmoM tRNA uridine 5-oxyacetic acid(34) methyltransferase CmoM - cofit
PagCFBP13516_RS12890 elyC envelope biogenesis factor ElyC + cofit

Or browse nearby genes

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