Gene info for PagCFBP13516_RS04385 in Pantoea agglomerans CFBP13505 P0401

Name: rlmD
Annotation: 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
Type 1: Protein-coding gene
Located on scaffold NZ_CM143256, + strand, nucleotides 912,822 to 914,138
See nucleotide sequence around PagCFBP13516_RS04385 or for all of scaffold NZ_CM143256

Other databases: NCBI, other: PagCFBP13505_RS16855

Nearby Genes

500 ntgudD and garL are separated by 45 nucleotidesgarL and garR are separated by 19 nucleotidesgarR and PagCFBP13516_RS04375 are separated by 75 nucleotidesPagCFBP13516_RS04375 and barA are separated by 54 nucleotidesbarA and rlmD are separated by 93 nucleotidesrlmD and relA are separated by 29 nucleotidesrelA and mazG are separated by 158 nucleotidesmazG and pyrG are separated by 229 nucleotidespyrG and eno are separated by 76 nucleotideseno and queE are separated by 400 nucleotides PagCFBP13516_RS04360: gudD - glucarate dehydratase, at 905,678 to 907,009 gudD PagCFBP13516_RS04365: garL - 2-dehydro-3-deoxyglucarate aldolase, at 907,055 to 907,825 garL PagCFBP13516_RS04370: garR - 2-hydroxy-3-oxopropionate reductase, at 907,845 to 908,729 garR PagCFBP13516_RS04375: PagCFBP13516_RS04375 - glycerate kinase, at 908,805 to 909,944 _RS04375 PagCFBP13516_RS04380: barA - two-component sensor histidine kinase BarA, at 909,999 to 912,728 barA PagCFBP13516_RS04385: rlmD - 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD, at 912,822 to 914,138 rlmD PagCFBP13516_RS04390: relA - GTP diphosphokinase, at 914,168 to 916,399 relA PagCFBP13516_RS04395: mazG - nucleoside triphosphate pyrophosphohydrolase, at 916,558 to 917,346 mazG PagCFBP13516_RS04400: pyrG - glutamine hydrolyzing CTP synthase, at 917,576 to 919,213 pyrG PagCFBP13516_RS04405: eno - phosphopyruvate hydratase, at 919,290 to 920,585 eno PagCFBP13516_RS04410: queE - 7-carboxy-7-deazaguanine synthase QueE, at 920,986 to 921,657 queE
Locus Name Description Strand Phenotype
PagCFBP13516_RS04360 gudD glucarate dehydratase + cofit
PagCFBP13516_RS04365 garL 2-dehydro-3-deoxyglucarate aldolase + cofit
PagCFBP13516_RS04370 garR 2-hydroxy-3-oxopropionate reductase + cofit
PagCFBP13516_RS04375 PagCFBP13516_RS04375 glycerate kinase + strong
PagCFBP13516_RS04380 barA two-component sensor histidine kinase BarA - strong
PagCFBP13516_RS04385 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD + cofit
PagCFBP13516_RS04390 relA GTP diphosphokinase + cofit
PagCFBP13516_RS04395 mazG nucleoside triphosphate pyrophosphohydrolase + cofit
PagCFBP13516_RS04400 pyrG glutamine hydrolyzing CTP synthase + no data
PagCFBP13516_RS04405 eno phosphopyruvate hydratase + no data
PagCFBP13516_RS04410 queE 7-carboxy-7-deazaguanine synthase QueE + insig.

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