Gene info for HER17_RS04920 in Pectobacterium carotovorum WPP14

Annotation: Hcp family type VI secretion system effector
Type 1: Protein-coding gene
Located on scaffold NZ_CP051652, + strand, nucleotides 1,113,951 to 1,114,469
See nucleotide sequence around HER17_RS04920 or for all of scaffold NZ_CP051652

Other databases: NCBI

Nearby Genes

500 ntHER17_RS04895 and HER17_RS04900 are separated by 11 nucleotidesHER17_RS04900 and HER17_RS04905 are separated by 24 nucleotidesHER17_RS04905 and HER17_RS04910 are separated by 48 nucleotidesHER17_RS04910 and HER17_RS04915 are separated by 28 nucleotidesHER17_RS04915 and HER17_RS04920 are separated by 623 nucleotidesHER17_RS04920 and HER17_RS04925 are separated by 196 nucleotidesHER17_RS04925 and HER17_RS04930 are separated by 9 nucleotidesHER17_RS04930 and HER17_RS04935 are separated by 80 nucleotidesHER17_RS04935 and HER17_RS04940 are separated by 158 nucleotidesHER17_RS04940 and HER17_RS04945 overlap by 4 nucleotides HER17_RS04895: HER17_RS04895 - type VI secretion system-associated protein TagO, at 1,104,940 to 1,105,500 _RS04895 HER17_RS04900: HER17_RS04900 - type VI secretion system protein TssA, at 1,105,512 to 1,106,936 _RS04900 HER17_RS04905: HER17_RS04905 - type VI secretion system membrane subunit TssM, at 1,106,961 to 1,110,458 _RS04905 HER17_RS04910: HER17_RS04910 - type VI secretion system ImpA family N-terminal domain-containing protein, at 1,110,507 to 1,111,943 _RS04910 HER17_RS04915: HER17_RS04915 - sel1 repeat family protein, at 1,111,972 to 1,113,327 _RS04915 HER17_RS04920: HER17_RS04920 - Hcp family type VI secretion system effector, at 1,113,951 to 1,114,469 _RS04920 HER17_RS04925: HER17_RS04925 - type VI secretion system tip protein VgrG, at 1,114,666 to 1,116,703 _RS04925 HER17_RS04930: HER17_RS04930 - PAAR domain-containing protein, at 1,116,713 to 1,118,083 _RS04930 HER17_RS04935: HER17_RS04935 - hypothetical protein, at 1,118,164 to 1,118,862 _RS04935 HER17_RS04940: HER17_RS04940 - DUF4123 domain-containing protein, at 1,119,021 to 1,119,977 _RS04940 HER17_RS04945: HER17_RS04945 - DUF4123 domain-containing protein, at 1,119,974 to 1,120,891 _RS04945
Locus Name Description Strand Phenotype
HER17_RS04895 HER17_RS04895 type VI secretion system-associated protein TagO + insig.
HER17_RS04900 HER17_RS04900 type VI secretion system protein TssA + cofit
HER17_RS04905 HER17_RS04905 type VI secretion system membrane subunit TssM + cofit
HER17_RS04910 HER17_RS04910 type VI secretion system ImpA family N-terminal domain-containing protein + insig.
HER17_RS04915 HER17_RS04915 sel1 repeat family protein + insig.
HER17_RS04920 HER17_RS04920 Hcp family type VI secretion system effector + insig.
HER17_RS04925 HER17_RS04925 type VI secretion system tip protein VgrG + insig.
HER17_RS04930 HER17_RS04930 PAAR domain-containing protein + insig.
HER17_RS04935 HER17_RS04935 hypothetical protein + strong
HER17_RS04940 HER17_RS04940 DUF4123 domain-containing protein + insig.
HER17_RS04945 HER17_RS04945 DUF4123 domain-containing protein + insig.

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