Gene info for PS417_04205 in Pseudomonas simiae WCS417

Updated annotation (from data): D-galacturonate transporter (MFS superfamily)
Rationale: Specific phenotype on galacturonate. This phenotype is conserved. There is also another putative hexuronate transporter that has a weaker phenotype on galacturonate (PS417_14775).
Original annotation: glucarate transporter
Type 1: Protein-coding gene
Located on scaffold CP007637, + strand, nucleotides 942,350 to 943,714
See nucleotide sequence around PS417_04205 or for all of scaffold CP007637

Other databases: NCBI, IMG: 2586029506, uniprot: A0A1N7UA77

Nearby Genes

500 ntPS417_04180 and PS417_04185 are separated by 10 nucleotidesPS417_04185 and PS417_04190 are separated by 152 nucleotidesPS417_04190 and PS417_04195 are separated by 234 nucleotidesPS417_04195 and PS417_04200 are separated by 54 nucleotidesPS417_04200 and PS417_04205 are separated by 99 nucleotidesPS417_04205 and PS417_04210 are separated by 11 nucleotidesPS417_04210 and PS417_04215 are separated by 189 nucleotidesPS417_04215 and PS417_04220 overlap by 4 nucleotidesPS417_04220 and PS417_04225 overlap by 4 nucleotidesPS417_04225 and PS417_04230 are separated by 58 nucleotides PS417_04180: PS417_04180 - GntR family transcriptional regulator, at 937,349 to 938,098 _04180 PS417_04185: PS417_04185 - hypothetical protein, at 938,109 to 938,294 _04185 PS417_04190: PS417_04190 - phosphatidylcholine-hydrolyzing phospholipase, at 938,447 to 939,604 _04190 PS417_04195: PS417_04195 - 5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41) (from data), at 939,839 to 940,750 _04195 PS417_04200: PS417_04200 - 2-ketoglutaric semialdehyde dehydrogenase (EC 1.2.1.26) (from data), at 940,805 to 942,250 _04200 PS417_04205: PS417_04205 - D-galacturonate transporter (MFS superfamily) (from data), at 942,350 to 943,714 _04205 PS417_04210: PS417_04210 - Galactarate dehydratase (EC 4.2.1.42) (from data), at 943,726 to 945,279 _04210 PS417_04215: PS417_04215 - malate transporter, at 945,469 to 946,410 _04215 PS417_04220: PS417_04220 - 4-carboxymuconolactone decarboxylase, at 946,407 to 946,787 _04220 PS417_04225: PS417_04225 - conjugal transfer protein TraR, at 946,784 to 947,830 _04225 PS417_04230: PS417_04230 - lipoprotein, at 947,889 to 948,260 _04230
Locus Name Description Strand Phenotype
PS417_04180 PS417_04180 GntR family transcriptional regulator + strong
PS417_04185 PS417_04185 hypothetical protein - insig.
PS417_04190 PS417_04190 phosphatidylcholine-hydrolyzing phospholipase - insig.
PS417_04195 PS417_04195 5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41) (from data) + strong
PS417_04200 PS417_04200 2-ketoglutaric semialdehyde dehydrogenase (EC 1.2.1.26) (from data) + strong
PS417_04205 PS417_04205 D-galacturonate transporter (MFS superfamily) (from data) + strong
PS417_04210 PS417_04210 Galactarate dehydratase (EC 4.2.1.42) (from data) + sig.
PS417_04215 PS417_04215 malate transporter + insig.
PS417_04220 PS417_04220 4-carboxymuconolactone decarboxylase - strong
PS417_04225 PS417_04225 conjugal transfer protein TraR - sig.
PS417_04230 PS417_04230 lipoprotein - insig.

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