Gene info for PS417_04195 in Pseudomonas simiae WCS417

Updated annotation (from data): 5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41)
Rationale: Specifically important for utilizing D-Galacturonic Acid monohydrate. Automated validation from mutant phenotype: the predicted function (4.2.1.41) was linked to the condition via a SEED subsystem. This annotation was also checked manually.
Original annotation: 5-dehydro-4-deoxyglucarate dehydratase
Type 1: Protein-coding gene
Located on scaffold CP007637, + strand, nucleotides 939,839 to 940,750
See nucleotide sequence around PS417_04195 or for all of scaffold CP007637

Other databases: NCBI, IMG: 2586029504, uniprot: A0A1N7U232

Nearby Genes

500 ntPS417_04170 and PS417_04175 are separated by 17 nucleotidesPS417_04175 and PS417_04180 are separated by 158 nucleotidesPS417_04180 and PS417_04185 are separated by 10 nucleotidesPS417_04185 and PS417_04190 are separated by 152 nucleotidesPS417_04190 and PS417_04195 are separated by 234 nucleotidesPS417_04195 and PS417_04200 are separated by 54 nucleotidesPS417_04200 and PS417_04205 are separated by 99 nucleotidesPS417_04205 and PS417_04210 are separated by 11 nucleotidesPS417_04210 and PS417_04215 are separated by 189 nucleotidesPS417_04215 and PS417_04220 overlap by 4 nucleotides PS417_04170: PS417_04170 - stringent starvation protein A, at 936,136 to 936,753 _04170 PS417_04175: PS417_04175 - peptidase, at 936,771 to 937,190 _04175 PS417_04180: PS417_04180 - GntR family transcriptional regulator, at 937,349 to 938,098 _04180 PS417_04185: PS417_04185 - hypothetical protein, at 938,109 to 938,294 _04185 PS417_04190: PS417_04190 - phosphatidylcholine-hydrolyzing phospholipase, at 938,447 to 939,604 _04190 PS417_04195: PS417_04195 - 5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41) (from data), at 939,839 to 940,750 _04195 PS417_04200: PS417_04200 - 2-ketoglutaric semialdehyde dehydrogenase (EC 1.2.1.26) (from data), at 940,805 to 942,250 _04200 PS417_04205: PS417_04205 - D-galacturonate transporter (MFS superfamily) (from data), at 942,350 to 943,714 _04205 PS417_04210: PS417_04210 - Galactarate dehydratase (EC 4.2.1.42) (from data), at 943,726 to 945,279 _04210 PS417_04215: PS417_04215 - malate transporter, at 945,469 to 946,410 _04215 PS417_04220: PS417_04220 - 4-carboxymuconolactone decarboxylase, at 946,407 to 946,787 _04220
Locus Name Description Strand Phenotype
PS417_04170 PS417_04170 stringent starvation protein A + strong
PS417_04175 PS417_04175 peptidase + insig.
PS417_04180 PS417_04180 GntR family transcriptional regulator + strong
PS417_04185 PS417_04185 hypothetical protein - insig.
PS417_04190 PS417_04190 phosphatidylcholine-hydrolyzing phospholipase - insig.
PS417_04195 PS417_04195 5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41) (from data) + strong
PS417_04200 PS417_04200 2-ketoglutaric semialdehyde dehydrogenase (EC 1.2.1.26) (from data) + strong
PS417_04205 PS417_04205 D-galacturonate transporter (MFS superfamily) (from data) + strong
PS417_04210 PS417_04210 Galactarate dehydratase (EC 4.2.1.42) (from data) + sig.
PS417_04215 PS417_04215 malate transporter + insig.
PS417_04220 PS417_04220 4-carboxymuconolactone decarboxylase - strong

Or browse nearby genes

Or see the comparative fitness browser