Gene info for GFF5878 in Variovorax sp. SCN45

Annotation: 16S rRNA (cytosine(967)-C(5))-methyltransferase (EC 2.1.1.176)
Type 1: Protein-coding gene
Located on scaffold scaffold00000016, - strand, nucleotides 92,700 to 94,001
See nucleotide sequence around GFF5878 or for all of scaffold scaffold00000016

Nearby Genes

500 ntGFF5873 and GFF5874 are separated by 128 nucleotidesGFF5874 and GFF5875 are separated by 203 nucleotidesGFF5875 and GFF5876 are separated by 89 nucleotidesGFF5876 and GFF5877 are separated by 56 nucleotidesGFF5877 and GFF5878 are separated by 28 nucleotidesGFF5878 and GFF5879 are separated by 146 nucleotidesGFF5879 and GFF5880 are separated by 102 nucleotidesGFF5880 and GFF5881 are separated by 21 nucleotidesGFF5881 and GFF5882 are separated by 250 nucleotidesGFF5882 and GFF5883 are separated by 41 nucleotides GFF5873 - no description, at 87,540 to 87,725 GFF5873 GFF5874 - hypothetical protein, at 87,854 to 88,756 GFF5874 GFF5875 - Probable nitrogen assimilation regulatory protein NtrX, at 88,960 to 89,661 GFF5875 GFF5876 - Nitrogen regulation protein NtrY (EC 2.7.3.-), at 89,751 to 92,021 GFF5876 GFF5877 - Probable proline rich signal peptide protein, at 92,078 to 92,671 GFF5877 GFF5878 - 16S rRNA (cytosine(967)-C(5))-methyltransferase (EC 2.1.1.176), at 92,700 to 94,001 GFF5878 GFF5879 - LemA, at 94,148 to 94,738 GFF5879 GFF5880 - DNA-directed RNA polymerase beta' subunit (EC 2.7.7.6), at 94,841 to 99,076 GFF5880 GFF5881 - DNA-directed RNA polymerase beta subunit (EC 2.7.7.6), at 99,098 to 103,222 GFF5881 GFF5882 - LSU ribosomal protein L7p/L12p (P1/P2), at 103,473 to 103,847 GFF5882 GFF5883 - LSU ribosomal protein L10p (P0), at 103,889 to 104,428 GFF5883
Locus Name Description Strand Phenotype
GFF5873 no description - no data
GFF5874 hypothetical protein - insig.
GFF5875 Probable nitrogen assimilation regulatory protein NtrX - no data
GFF5876 Nitrogen regulation protein NtrY (EC 2.7.3.-) - strong
GFF5877 Probable proline rich signal peptide protein - strong
GFF5878 16S rRNA (cytosine(967)-C(5))-methyltransferase (EC 2.1.1.176) - insig.
GFF5879 LemA - insig.
GFF5880 DNA-directed RNA polymerase beta' subunit (EC 2.7.7.6) - no data
GFF5881 DNA-directed RNA polymerase beta subunit (EC 2.7.7.6) - no data
GFF5882 LSU ribosomal protein L7p/L12p (P1/P2) - no data
GFF5883 LSU ribosomal protein L10p (P0) - no data

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