Gene info for GFF5854 in Variovorax sp. SCN45

Annotation: Type I secretion system, outer membrane component LapE
Type 1: Protein-coding gene
Located on scaffold scaffold00000016, - strand, nucleotides 34,289 to 35,713
See nucleotide sequence around GFF5854 or for all of scaffold scaffold00000016

Nearby Genes

500 ntGFF5849 and GFF5850 are separated by 147 nucleotidesGFF5850 and GFF5851 are separated by 21 nucleotidesGFF5851 and GFF5852 are separated by 7 nucleotidesGFF5852 and GFF5853 overlap by 14 nucleotidesGFF5853 and GFF5854 overlap by 4 nucleotidesGFF5854 and GFF5855 are separated by 5 nucleotidesGFF5855 and GFF5856 are separated by 321 nucleotidesGFF5856 and GFF5857 are separated by 109 nucleotidesGFF5857 and GFF5858 overlap by 4 nucleotidesGFF5858 and GFF5859 are separated by 119 nucleotides GFF5849 - FIG01210206: hypothetical protein, at 27,418 to 28,077 GFF5849 GFF5850 - Aldehyde dehydrogenase (EC 1.2.1.3); Probable coniferyl aldehyde dehydrogenase (EC 1.2.1.68), at 28,225 to 29,625 GFF5850 GFF5851 - TPR repeat, at 29,647 to 30,915 GFF5851 GFF5852 - Type I secretion membrane fusion protein, HlyD family @ Type I secretion system, membrane fusion protein LapC, at 30,923 to 32,179 GFF5852 GFF5853 - Type I secretion system ATPase, LssB family LapB, at 32,166 to 34,292 GFF5853 GFF5854 - Type I secretion system, outer membrane component LapE, at 34,289 to 35,713 GFF5854 GFF5855 - T1SS secreted agglutinin RTX, at 35,719 to 55,560 GFF5855 GFF5856 - Outer membrane receptor proteins, likely involved in siderophore uptake, at 55,882 to 58,413 GFF5856 GFF5857 - Fe2+-dicitrate sensor, membrane component, at 58,523 to 59,509 GFF5857 GFF5858 - heme uptake regulator, at 59,506 to 60,033 GFF5858 GFF5859 - KEGG: nickel transport system substrate-binding protein, at 60,153 to 60,905 GFF5859
Locus Name Description Strand Phenotype
GFF5849 FIG01210206: hypothetical protein + insig.
GFF5850 Aldehyde dehydrogenase (EC 1.2.1.3); Probable coniferyl aldehyde dehydrogenase (EC 1.2.1.68) + insig.
GFF5851 TPR repeat - insig.
GFF5852 Type I secretion membrane fusion protein, HlyD family @ Type I secretion system, membrane fusion protein LapC - insig.
GFF5853 Type I secretion system ATPase, LssB family LapB - insig.
GFF5854 Type I secretion system, outer membrane component LapE - insig.
GFF5855 T1SS secreted agglutinin RTX - insig.
GFF5856 Outer membrane receptor proteins, likely involved in siderophore uptake - insig.
GFF5857 Fe2+-dicitrate sensor, membrane component - insig.
GFF5858 heme uptake regulator - insig.
GFF5859 KEGG: nickel transport system substrate-binding protein - insig.

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