Gene info for GFF5806 in Variovorax sp. SCN45

Annotation: RNA polymerase ECF-type sigma factor
Type 1: Protein-coding gene
Located on scaffold scaffold00000015, - strand, nucleotides 181,705 to 182,280
See nucleotide sequence around GFF5806 or for all of scaffold scaffold00000015

Nearby Genes

500 ntGFF5801 and GFF5802 overlap by 4 nucleotidesGFF5802 and GFF5803 are separated by 195 nucleotidesGFF5803 and GFF5804 are separated by 130 nucleotidesGFF5804 and GFF5805 are separated by 27 nucleotidesGFF5805 and GFF5806 overlap by 14 nucleotidesGFF5806 and GFF5807 are separated by 157 nucleotidesGFF5807 and GFF5808 are separated by 85 nucleotidesGFF5808 and GFF5809 are separated by 190 nucleotidesGFF5809 and GFF5810 are separated by 4 nucleotidesGFF5810 and GFF5811 overlap by 4 nucleotides GFF5801 - Urea ABC transporter, permease protein UrtC, at 176,640 to 177,857 GFF5801 GFF5802 - Urea ABC transporter, ATPase protein UrtD, at 177,854 to 178,732 GFF5802 GFF5803 - Urea ABC transporter, ATPase protein UrtE, at 178,928 to 179,620 GFF5803 GFF5804 - FIG00978734: hypothetical protein, at 179,751 to 181,004 GFF5804 GFF5805 - Putative transmembrane protein, at 181,032 to 181,718 GFF5805 GFF5806 - RNA polymerase ECF-type sigma factor, at 181,705 to 182,280 GFF5806 GFF5807 - hypothetical protein, at 182,438 to 183,685 GFF5807 GFF5808 - Putative oxidoreductase, at 183,771 to 184,781 GFF5808 GFF5809 - Outer membrane factor (OMF) lipoprotein associated wth MdtABC efflux system, at 184,972 to 186,465 GFF5809 GFF5810 - Multidrug efflux system MdtABC-TolC, membrane fusion component MdtA, at 186,470 to 187,705 GFF5810 GFF5811 - Multidrug efflux system MdtABC-TolC, inner-membrane proton/drug antiporter MdtB-like, at 187,702 to 190,872 GFF5811
Locus Name Description Strand Phenotype
GFF5801 Urea ABC transporter, permease protein UrtC + insig.
GFF5802 Urea ABC transporter, ATPase protein UrtD + no data
GFF5803 Urea ABC transporter, ATPase protein UrtE + insig.
GFF5804 FIG00978734: hypothetical protein + insig.
GFF5805 Putative transmembrane protein - insig.
GFF5806 RNA polymerase ECF-type sigma factor - insig.
GFF5807 hypothetical protein + insig.
GFF5808 Putative oxidoreductase + insig.
GFF5809 Outer membrane factor (OMF) lipoprotein associated wth MdtABC efflux system + insig.
GFF5810 Multidrug efflux system MdtABC-TolC, membrane fusion component MdtA + insig.
GFF5811 Multidrug efflux system MdtABC-TolC, inner-membrane proton/drug antiporter MdtB-like + insig.

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