Gene info for GFF5488 in Variovorax sp. SCN45

Annotation: Protein of unknown function Smg
Type 1: Protein-coding gene
Located on scaffold scaffold00000014, - strand, nucleotides 120,762 to 121,280
See nucleotide sequence around GFF5488 or for all of scaffold scaffold00000014

Nearby Genes

500 ntGFF5483 and GFF5484 are separated by 287 nucleotidesGFF5484 and GFF5485 are separated by 91 nucleotidesGFF5485 and GFF5486 are separated by 18 nucleotidesGFF5486 and GFF5487 are separated by 127 nucleotidesGFF5487 and GFF5488 are separated by 13 nucleotidesGFF5488 and GFF5489 are separated by 105 nucleotidesGFF5489 and GFF5490 are separated by 126 nucleotidesGFF5490 and GFF5491 are separated by 159 nucleotidesGFF5491 and GFF5492 are separated by 2 nucleotidesGFF5492 and GFF5493 overlap by 4 nucleotides GFF5483 - Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits, at 111,037 to 114,648 GFF5483 GFF5484 - Protein translocase subunit YajC, at 114,936 to 115,271 GFF5484 GFF5485 - Protein translocase subunit SecD, at 115,363 to 117,243 GFF5485 GFF5486 - Protein translocase subunit SecF, at 117,262 to 118,221 GFF5486 GFF5487 - Thymidine phosphorylase (EC 2.4.2.4), at 118,349 to 120,748 GFF5487 GFF5488 - Protein of unknown function Smg, at 120,762 to 121,280 GFF5488 GFF5489 - Rossmann fold nucleotide-binding protein Smf possibly involved in DNA uptake, at 121,386 to 122,483 GFF5489 GFF5490 - Uncharacterized protein with LysM domain, COG1652, at 122,610 to 123,830 GFF5490 GFF5491 - Peptide deformylase (EC 3.5.1.88), at 123,990 to 124,508 GFF5491 GFF5492 - Putative transmembrane lipoprotein, at 124,511 to 125,023 GFF5492 GFF5493 - Methionyl-tRNA formyltransferase (EC 2.1.2.9), at 125,020 to 125,976 GFF5493
Locus Name Description Strand Phenotype
GFF5483 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits + cofit
GFF5484 Protein translocase subunit YajC + sig.
GFF5485 Protein translocase subunit SecD + no data
GFF5486 Protein translocase subunit SecF + no data
GFF5487 Thymidine phosphorylase (EC 2.4.2.4) + cofit
GFF5488 Protein of unknown function Smg - insig.
GFF5489 Rossmann fold nucleotide-binding protein Smf possibly involved in DNA uptake - insig.
GFF5490 Uncharacterized protein with LysM domain, COG1652 - strong
GFF5491 Peptide deformylase (EC 3.5.1.88) + strong
GFF5492 Putative transmembrane lipoprotein + insig.
GFF5493 Methionyl-tRNA formyltransferase (EC 2.1.2.9) + no data

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