Gene info for GFF5321 in Variovorax sp. SCN45

Annotation: Type IV pilus biogenesis protein PilO
Type 1: Protein-coding gene
Located on scaffold scaffold00000013, + strand, nucleotides 198,450 to 199,127
See nucleotide sequence around GFF5321 or for all of scaffold scaffold00000013

Nearby Genes

500 ntGFF5316 and GFF5317 are separated by 63 nucleotidesGFF5317 and GFF5318 are separated by 9 nucleotidesGFF5318 and GFF5319 are separated by 239 nucleotidesGFF5319 and GFF5320 overlap by 4 nucleotidesGFF5320 and GFF5321 are separated by 6 nucleotidesGFF5321 and GFF5322 overlap by 4 nucleotidesGFF5322 and GFF5323 overlap by 4 nucleotidesGFF5323 and GFF5324 are separated by 86 nucleotidesGFF5324 and GFF5325 are separated by 34 nucleotidesGFF5325 and GFF5326 overlap by 4 nucleotides GFF5316 - Diaminopimelate decarboxylase and/or diaminopimelate epimerase leader peptide, at 193,460 to 193,687 GFF5316 GFF5317 - Frataxin homolog CyaY, facilitates Fe-S cluster assembly, interacts with IscS, at 193,751 to 194,083 GFF5317 GFF5318 - Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-), at 194,093 to 196,504 GFF5318 GFF5319 - Type IV pilus biogenesis protein PilM, at 196,744 to 197,823 GFF5319 GFF5320 - Type IV pilus biogenesis protein PilN, at 197,820 to 198,443 GFF5320 GFF5321 - Type IV pilus biogenesis protein PilO, at 198,450 to 199,127 GFF5321 GFF5322 - Type IV pilus biogenesis protein PilP, at 199,124 to 199,663 GFF5322 GFF5323 - Type IV pilus biogenesis protein PilQ, at 199,660 to 201,840 GFF5323 GFF5324 - Shikimate kinase I (EC 2.7.1.71), at 201,927 to 202,412 GFF5324 GFF5325 - 3-dehydroquinate synthase (EC 4.2.3.4), at 202,447 to 203,556 GFF5325 GFF5326 - Deoxyguanosinetriphosphate triphosphohydrolase (EC 3.1.5.1), at 203,553 to 204,683 GFF5326
Locus Name Description Strand Phenotype
GFF5316 Diaminopimelate decarboxylase and/or diaminopimelate epimerase leader peptide - no data
GFF5317 Frataxin homolog CyaY, facilitates Fe-S cluster assembly, interacts with IscS + cofit
GFF5318 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) - cofit
GFF5319 Type IV pilus biogenesis protein PilM + strong
GFF5320 Type IV pilus biogenesis protein PilN + strong
GFF5321 Type IV pilus biogenesis protein PilO + strong
GFF5322 Type IV pilus biogenesis protein PilP + strong
GFF5323 Type IV pilus biogenesis protein PilQ + strong
GFF5324 Shikimate kinase I (EC 2.7.1.71) + insig.
GFF5325 3-dehydroquinate synthase (EC 4.2.3.4) + cofit
GFF5326 Deoxyguanosinetriphosphate triphosphohydrolase (EC 3.1.5.1) + insig.

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